Uses of Class
ubic.erminej.analysis.GeneSetPvalRun

Packages that use GeneSetPvalRun

Package	Description
ubic.erminej
ubic.erminej.gui
ubic.erminej.gui.geneset
ubic.erminej.gui.geneset.table
ubic.erminej.gui.geneset.tree

Uses of GeneSetPvalRun in ubic.erminej

Methods in ubic.erminej that return GeneSetPvalRun

Modifier and Type	Method and Description
protected GeneSetPvalRun	classScoreCMD.analyze()

Methods in ubic.erminej that return types with arguments of type GeneSetPvalRun

Modifier and Type	Method and Description
Collection<GeneSetPvalRun>	Analyzer.doAnalysis()
Collection<GeneSetPvalRun>	Analyzer.getLatestResults() Blocks until results are returned.
static Collection<GeneSetPvalRun>	ResultsFileReader.load(GeneAnnotations geneAnnots, String filename, StatusViewer messenger)
Collection<GeneSetPvalRun>	Analyzer.loadAnalysis() Load from a file, which can contain more than one set.

Methods in ubic.erminej with parameters of type GeneSetPvalRun

Modifier and Type	Method and Description
static void	ResultsPrinter.write(String destFile, GeneSetPvalRun run, boolean saveAllGeneNames)

Method parameters in ubic.erminej with type arguments of type GeneSetPvalRun

Modifier and Type	Method and Description
static void	ResultsPrinter.write(String path, SettingsHolder masterSettings, Collection<GeneSetPvalRun> runsToSave) Used for saving "projects".

Uses of GeneSetPvalRun in ubic.erminej.gui

Methods in ubic.erminej.gui that return GeneSetPvalRun

Modifier and Type	Method and Description
GeneSetPvalRun	MainFrame.getCurrentResultSet()
GeneSetPvalRun	MainFrame.getResultSet(int runIndex)

Methods in ubic.erminej.gui that return types with arguments of type GeneSetPvalRun

Modifier and Type	Method and Description
List<GeneSetPvalRun>	MainFrame.getResultSets()

Methods in ubic.erminej.gui with parameters of type GeneSetPvalRun

Modifier and Type	Method and Description
void	MainFrame.setCurrentResultSet(GeneSetPvalRun resultSet)

Uses of GeneSetPvalRun in ubic.erminej.gui.geneset

Methods in ubic.erminej.gui.geneset with parameters of type GeneSetPvalRun

Modifier and Type	Method and Description
abstract void	GeneSetPanel.removeRun(GeneSetPvalRun runToRemove) Do any extra cleanup after a run has been deleted.
protected void	GeneSetPanel.showDetailsForGeneSet(GeneSetTerm id, GeneSetPvalRun run) Create the popup window with the visualization for a specific gene set and results.

Uses of GeneSetPvalRun in ubic.erminej.gui.geneset.table

Methods in ubic.erminej.gui.geneset.table with parameters of type GeneSetPvalRun

Modifier and Type	Method and Description
void	GeneSetTablePanel.removeRun(GeneSetPvalRun runToRemove)

Constructor parameters in ubic.erminej.gui.geneset.table with type arguments of type GeneSetPvalRun

Constructor and Description
GeneSetTableModel(GeneAnnotations geneData, List<GeneSetPvalRun> results)

Uses of GeneSetPvalRun in ubic.erminej.gui.geneset.tree

Methods in ubic.erminej.gui.geneset.tree with parameters of type GeneSetPvalRun

Modifier and Type	Method and Description
void	GeneSetTreePanel.removeRun(GeneSetPvalRun runToRemove)
void	FilteredGeneSetTreeModel.setResults(GeneSetPvalRun results)