Class | Description |
---|---|
Analyzer | |
classScoreCMD |
Run ermineJ from the command line (or fire up the GUI).
|
ClassScoreSimple |
Simple API to run ermineJ analyses, using Strings as the initial representations.
|
ErmineJGui |
Main for GUI
|
ResultsFileReader |
Load results from a file.
|
ResultsPrinter | |
Settings |
Basically a wrapper around a Commons Configuration object.
|
SettingsHolder |
Holds settings for retrieval but doesn't allow changing them (with a couple of exceptions) or saving them.
|
Enum | Description |
---|---|
SettingsHolder.GeneScoreMethod |
For the gene set resampling method, how are scores computed for the group?
|
SettingsHolder.Method |
Which gene set scoring method to use.
|
SettingsHolder.MultiProbeHandling |
What to do when there are multiple values for a gene.
|
SettingsHolder.MultiTestCorrMethod |
How to correct for multiple tests.
|
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