Thread.State, Thread.UncaughtExceptionHandler
Modifier and Type | Field and Description |
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protected static org.apache.commons.logging.Log |
log |
MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY
Constructor and Description |
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Analyzer(SettingsHolder settings,
StatusViewer messenger,
GeneAnnotations geneAnnots) |
Analyzer(SettingsHolder settings,
StatusViewer messenger,
GeneAnnotations geneAnnots,
String loadFile)
For loading an analysis from a file.
|
Modifier and Type | Method and Description |
---|---|
Collection<GeneSetPvalRun> |
doAnalysis() |
Collection<GeneSetPvalRun> |
getLatestResults()
Blocks until results are returned.
|
boolean |
isFinishedNormally() |
boolean |
isStop() |
boolean |
isWasError() |
Collection<GeneSetPvalRun> |
loadAnalysis()
Load from a file, which can contain more than one set.
|
void |
run() |
void |
stopRunning(boolean s) |
activeCount, checkAccess, clone, countStackFrames, currentThread, destroy, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, stop, suspend, toString, yield
public Analyzer(SettingsHolder settings, StatusViewer messenger, GeneAnnotations geneAnnots)
csframe
- settings
- messenger
- geneAnnots
- rawDataSets
- geneScoreSets
- public Analyzer(SettingsHolder settings, StatusViewer messenger, GeneAnnotations geneAnnots, String loadFile)
csframe
- settings
- messenger
- geneAnnots
- rawDataSets
- geneScoreSets
- loadFile
- public Collection<GeneSetPvalRun> getLatestResults() throws IllegalStateException
IllegalStateException
public boolean isFinishedNormally()
public boolean isStop()
public boolean isWasError()
public Collection<GeneSetPvalRun> loadAnalysis() throws Exception
IOException
Exception
public void stopRunning(boolean s)
finished
- public Collection<GeneSetPvalRun> doAnalysis()
results
- IOException
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