ubic.erminej

Class ResultsPrinter

java.lang.Object

ubic.erminej.ResultsPrinter

public class ResultsPrinter
extends Object

Version:

$Id: ResultsPrinter.java,v 1.14 2013/05/20 00:31:10 paul Exp $

Author:

pavlidis

Field Summary

Fields

Modifier and Type	Field and Description
protected static String	END_OF_SETTINGS_SEPARATOR
protected static String	RUN_INDICATOR
protected static String	RUN_NAME_FIELD_PATTERN

Constructor Summary

Constructors

Constructor and Description
ResultsPrinter()

Method Summary

Methods

Modifier and Type	Method and Description
static void	write(String destFile, GeneSetPvalRun run, boolean saveAllGeneNames)
static void	write(String path, SettingsHolder masterSettings, Collection<GeneSetPvalRun> runsToSave) Used for saving "projects".

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

RUN_NAME_FIELD_PATTERN

protected static final String RUN_NAME_FIELD_PATTERN

See Also:

Constant Field Values

RUN_INDICATOR

protected static final String RUN_INDICATOR

See Also:

Constant Field Values

END_OF_SETTINGS_SEPARATOR

protected static final String END_OF_SETTINGS_SEPARATOR

See Also:

Constant Field Values

Constructor Detail

ResultsPrinter

public ResultsPrinter()

Method Detail

write

public static void write(String destFile,
         GeneSetPvalRun run,
         boolean saveAllGeneNames)
                  throws IOException

Parameters:

destFile - output file name

run - Analysis run to be saved

goName - GO information

saveAllGeneNames - Whether the output should include all the genes

Throws:

IOException

write

public static void write(String path,
         SettingsHolder masterSettings,
         Collection<GeneSetPvalRun> runsToSave)
                  throws IOException

Used for saving "projects".

Parameters:

path - Output path (always clobbered)

masterSettings -

runsToSave -

Throws:

IOException