ubic.erminej.data

Class GeneSetTerm

java.lang.Object

ubic.erminej.data.GeneSetTerm

All Implemented Interfaces:

Comparable<GeneSetTerm>

public class GeneSetTerm
extends Object
implements Comparable<GeneSetTerm>

Represents a GO term (most commonly) or other way of grouping genes.

Version:

$Id: GeneSetTerm.java,v 1.3 2012/04/20 02:28:02 paul Exp $

Author:

pavlidis

Field Summary

Fields

Modifier and Type	Field and Description
protected static String	NO_NAME_AVAILABLE

Constructor Summary

Constructors

Constructor and Description
GeneSetTerm(String id)
GeneSetTerm(String id, String name)
GeneSetTerm(String id, String name, String def)

Method Summary

Methods

Modifier and Type	Method and Description
int	compareTo(GeneSetTerm o)
boolean	equals(Object obj)
String	getAspect()
String	getDefinition()
String	getId()
String	getName()
int	hashCode()
boolean	isAspect()
boolean	isUserDefined()
void	reset()
void	setAspect(String aspect)
void	setDefinition(String d)
void	setName(String n)
void	setUserDefined(boolean isUserDefined)
String	toString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Field Detail

NO_NAME_AVAILABLE

protected static String NO_NAME_AVAILABLE

Constructor Detail

GeneSetTerm

public GeneSetTerm(String id)

Parameters:

id -

GeneSetTerm

public GeneSetTerm(String id,
           String name)

GeneSetTerm

public GeneSetTerm(String id,
           String name,
           String def)

Parameters:

id -

name -

def -

Method Detail

compareTo

public int compareTo(GeneSetTerm o)

Specified by:

compareTo in interface Comparable<GeneSetTerm>

equals

public boolean equals(Object obj)

Overrides:

equals in class Object

getAspect

public String getAspect()

getDefinition

public String getDefinition()

Returns:

getId

public String getId()

Returns:

getName

public String getName()

Returns:

hashCode

public int hashCode()

Overrides:

hashCode in class Object

isUserDefined

public boolean isUserDefined()

reset

public void reset()

setAspect

public void setAspect(String aspect)

setDefinition

public void setDefinition(String d)

setName

public void setName(String n)

setUserDefined

public void setUserDefined(boolean isUserDefined)

toString

public String toString()

Overrides:

toString in class Object

isAspect

public boolean isAspect()

Returns:

true if this represents an aspect (molecular_function etc.)