Class Hierarchy
- java.lang.Object
- ubic.basecode.datafilter.AbstractFilter<M,R,C,V> (implements ubic.basecode.datafilter.Filter<M,R,C,V>)
- ubic.basecode.datafilter.AbstractLevelFilter<R,C>
- ubic.basecode.datafilter.AffymetrixProbeNameFilter<M,R,C,V>
- ubic.basecode.datafilter.RowAbsentFilter<M,R,C,V>
- ubic.basecode.datafilter.RowMissingFilter<M,R,C,V>
- ubic.basecode.datafilter.RowNameFilter<M,R,C,V>
- ubic.basecode.dataStructure.graph.AbstractGraph<R,K,V> (implements ubic.basecode.dataStructure.graph.Graph<R,K,V>)
- java.util.AbstractMap<K,V> (implements java.util.Map<K,V>)
- ubic.basecode.dataStructure.matrix.AbstractMatrix<R,C,V> (implements ubic.basecode.dataStructure.matrix.Matrix2D<R,C,V>, java.io.Serializable)
- ubic.basecode.dataStructure.matrix.CompressedBitMatrix<R,C> (implements ubic.basecode.dataStructure.matrix.ObjectMatrix<R,C,V>)
- ubic.basecode.dataStructure.matrix.DoubleMatrix<R,C> (implements ubic.basecode.dataStructure.matrix.PrimitiveMatrix<R,C,V>)
- ubic.basecode.dataStructure.matrix.IntegerMatrix<R,C> (implements ubic.basecode.dataStructure.matrix.PrimitiveMatrix<R,C,V>)
- ubic.basecode.dataStructure.matrix.ObjectMatrixImpl<R,C,V> (implements ubic.basecode.dataStructure.matrix.ObjectMatrix<R,C,V>)
- ubic.basecode.dataStructure.matrix.StringMatrix<R,C> (implements ubic.basecode.dataStructure.matrix.ObjectMatrix<R,C,V>)
- ubic.basecode.dataStructure.matrix.AbstractMatrix3D<R,C,S,V> (implements ubic.basecode.dataStructure.matrix.Matrix3D<R,C,S,V>)
- ubic.basecode.io.reader.AbstractMatrixReader<M,V>
- ubic.basecode.ontology.model.AbstractOntologyResource (implements ubic.basecode.ontology.model.OntologyResource)
- ubic.basecode.ontology.providers.AbstractOntologyService
- ubic.basecode.util.r.AbstractRClient (implements ubic.basecode.util.r.RClient)
- ubic.basecode.ontology.model.AnnotationPropertyImpl (implements ubic.basecode.ontology.model.AnnotationProperty)
- ubic.basecode.ontology.ncbo.AnnotatorClient
- ubic.basecode.ontology.ncbo.AnnotatorResponse (implements java.lang.Comparable<T>)
- ubic.basecode.util.r.type.AnovaEffect (implements java.io.Serializable)
- ubic.basecode.util.r.type.AnovaResult
- ubic.basecode.util.BatchIterator<E> (implements java.lang.Iterable<T>, java.util.Iterator<E>)
- ubic.basecode.dataStructure.tree.BinaryTree<T>
- ubic.basecode.dataStructure.BitUtil
- ubic.basecode.math.linalg.Blas
- ubic.basecode.util.BrowserLauncher
- ubic.basecode.io.ByteArrayConverter
- ubic.basecode.graphics.ColorMap
- ubic.basecode.graphics.ColorMatrix<A,B> (implements java.lang.Cloneable)
- java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
- ubic.basecode.util.Configuration
- ubic.basecode.util.ConfigUtils
- ubic.basecode.math.Constants
- ubic.basecode.math.CorrelationStats
- ubic.basecode.dataStructure.CountingMap<K> (implements java.util.Map<K,V>)
- ubic.basecode.io.excel.CreateSpreadSheet
- ubic.basecode.util.DateUtil
- cern.jet.stat.Descriptive
- ubic.basecode.math.linearmodels.DesignMatrix
- ubic.basecode.math.distribution.Dirichlet
- ubic.basecode.math.Distance
- ubic.basecode.dataStructure.matrix.DoubleMatrixFactory
- ubic.basecode.dataStructure.DoublePoint
- ubic.basecode.math.linalg.Dqrsl
- ubic.basecode.io.excel.ExcelUtil
- ubic.basecode.util.FileTools
- ubic.basecode.math.distribution.Histogram
- ubic.basecode.io.reader.HistogramReader
- ubic.basecode.math.distribution.HistogramSampler
- ubic.basecode.io.writer.HistogramWriter
- ubic.basecode.util.r.type.HTest
- ubic.basecode.ontology.search.IndexerSelector (implements com.hp.hpl.jena.rdf.model.Selector)
- org.apache.jena.larq.IndexLARQ
- ubic.basecode.math.KruskalWallis
- ubic.basecode.math.KSTest
- ubic.basecode.math.linearmodels.LeastSquaresFit
- ubic.basecode.math.linearmodels.LinearModelSummary (implements java.io.Serializable)
- ubic.basecode.io.reader.MapReader
- ubic.basecode.math.MathUtil
- ubic.basecode.math.MatrixNormalizer<R,C>
- ubic.basecode.math.MatrixRowStats
- ubic.basecode.math.MatrixStats
- ubic.basecode.dataStructure.matrix.MatrixUtil
- ubic.basecode.io.writer.MatrixWriter<R,C>
- ubic.basecode.math.linearmodels.MeanVarianceEstimator
- ubic.basecode.math.metaanalysis.MetaAnalysis
- ubic.basecode.math.linearmodels.ModeratedTstat
- ubic.basecode.math.MultipleTestCorrection
- ubic.basecode.util.NetUtils
- ubic.basecode.math.distribution.NormalProbabilityComputer (implements ubic.basecode.math.distribution.ProbabilityComputer)
- ubic.basecode.ontology.ncbo.OmimAnnotatorClient
- ubic.basecode.ontology.search.OntologyIndexer
- ubic.basecode.ontology.OntologyLoader
- ubic.basecode.ontology.search.OntologySearch
- ubic.basecode.ontology.OntologyUtil
- ubic.basecode.dataStructure.params.ParameterGrabber
- ubic.basecode.dataStructure.params.ParamKeeper
- cern.colt.PersistentObject (implements java.lang.Cloneable, java.io.Serializable)
- cern.colt.matrix.impl.AbstractMatrix
- cern.colt.matrix.impl.AbstractMatrix1D
- cern.colt.matrix.DoubleMatrix1D
- cern.colt.matrix.impl.DenseDoubleMatrix1D
- ubic.basecode.dataStructure.matrix.RCDoubleMatrix1D
- ubic.basecode.dataStructure.Point
- ubic.basecode.math.PrecisionRecall
- ubic.basecode.util.PrettyPrinter
- ubic.basecode.ontology.model.PropertyFactory
- ubic.basecode.math.linalg.QRDecomposition
- ubic.basecode.math.RandomChooser
- ubic.basecode.math.Rank
- ubic.basecode.util.r.RConnectionFactory
- ubic.basecode.util.RegressionTesting
- ubic.basecode.ontology.model.RestrictionFactory
- ubic.basecode.math.ROC
- ubic.basecode.math.linalg.SingularValueDecomposition<R,C>
- ubic.basecode.math.Smooth
- ubic.basecode.math.SpecFunc
- ubic.basecode.io.excel.SpreadSheetSchema
- ubic.basecode.util.SQLUtils
- ubic.basecode.math.Stats
- ubic.basecode.util.StatusDebugLogger (implements ubic.basecode.util.StatusViewer)
- ubic.basecode.util.StatusStderr (implements ubic.basecode.util.StatusViewer)
- ubic.basecode.io.StringConverter
- ubic.basecode.math.StringDistance
- ubic.basecode.util.StringUtil
- java.lang.Thread (implements java.lang.Runnable)
- java.lang.Throwable (implements java.io.Serializable)
- ubic.basecode.math.distribution.UniformDensityComputer (implements ubic.basecode.math.distribution.DensityGenerator)
- ubic.basecode.math.distribution.UniformProbabilityComputer (implements ubic.basecode.math.distribution.ProbabilityComputer)
- ubic.basecode.graphics.text.Util
- ubic.basecode.dataStructure.Visitable
- ubic.basecode.math.Wilcoxon
- ubic.basecode.math.distribution.Wishart
Interface Hierarchy
- ubic.basecode.ontology.model.AnnotationProperty
- ubic.basecode.ontology.model.ChainedStatementObject
- ubic.basecode.ontology.model.CharacteristicStatement
- java.lang.Comparable<T>
- ubic.basecode.math.distribution.DensityGenerator
- ubic.basecode.datafilter.Filter<M,R,C,V>
- ubic.basecode.dataStructure.graph.Graph<R,K,V>
- ubic.basecode.dataStructure.graph.GraphNode<K,V>
- ubic.basecode.dataStructure.matrix.Matrix2D<R,C,V>
- ubic.basecode.dataStructure.matrix.Matrix3D<R,C,S,V>
- ubic.basecode.math.distribution.ProbabilityComputer
- ubic.basecode.util.r.RClient
- java.io.Serializable
- ubic.basecode.io.excel.SpreadSheetFilter
- ubic.basecode.util.StatusViewer
Enum Hierarchy
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