ubic.basecode.ontology.providers

Class SequenceOntologyService

java.lang.Object

ubic.basecode.ontology.providers.AbstractOntologyService

ubic.basecode.ontology.providers.AbstractOntologyMemoryBackedService

ubic.basecode.ontology.providers.SequenceOntologyService

public class SequenceOntologyService
extends AbstractOntologyMemoryBackedService

Support for the Sequence Ontology

Author:

Paul

Nested Class Summary

Nested classes/interfaces inherited from class ubic.basecode.ontology.providers.AbstractOntologyService

AbstractOntologyService.OntologyInitializationThread

Field Summary

Fields inherited from class ubic.basecode.ontology.providers.AbstractOntologyService

cacheReady, index, indexReady, individuals, initializationThread, isInitialized, log, model, modelReady, terms

Constructor Summary

Constructors

Constructor and Description
SequenceOntologyService()

Method Summary

Modifier and Type	Method and Description
protected String	getOntologyName() The simple name of the ontology.
protected String	getOntologyUrl() Defines the location of the ontology eg: http://mged.sourceforge.net/ontologies/MGEDOntology.owl

Methods inherited from class ubic.basecode.ontology.providers.AbstractOntologyMemoryBackedService

loadModel, loadTermsInNameSpace

Methods inherited from class ubic.basecode.ontology.providers.AbstractOntologyService

addTerms, closeIndex, findIndividuals, findResources, findTerm, findUsingAlternativeId, getAllURIs, getModel, getResource, getTerm, getTermIndividuals, index, isEnabled, isInitializationThreadAlive, isOntologyLoaded, loadTermsInNameSpace, startInitializationThread

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SequenceOntologyService

public SequenceOntologyService()

Method Detail

getOntologyName

protected String getOntologyName()

Description copied from class: AbstractOntologyService

The simple name of the ontology. Used for indexing purposes. (ie this will determine the name of the underlying index for searching the ontology)

Specified by:

getOntologyName in class AbstractOntologyService

Returns:

getOntologyUrl

protected String getOntologyUrl()

Description copied from class: AbstractOntologyService

Defines the location of the ontology eg: http://mged.sourceforge.net/ontologies/MGEDOntology.owl

Specified by:

getOntologyUrl in class AbstractOntologyService

Returns: