ubic.basecode.ontology.model

Interface OntologyTerm

All Superinterfaces:

Comparable<OntologyResource>, OntologyResource, Serializable

All Known Subinterfaces:

OntologyCardinalityRestriction, OntologyClassRestriction, OntologyDatatypeRestriction, OntologyRestriction

All Known Implementing Classes:

OntologyCardinalityRestrictionImpl, OntologyClassRestrictionImpl, OntologyDatatypeRestrictionImpl, OntologyRestrictionImpl, OntologyTermImpl, OntologyTermSimple

public interface OntologyTerm
extends OntologyResource

Author:

Paul

Method Summary

Modifier and Type	Method and Description
Collection<String>	getAlternativeIds()
Collection<AnnotationProperty>	getAnnotations()
Collection<OntologyTerm>	getChildren(boolean direct)
String	getComment()
Collection<OntologyIndividual>	getIndividuals()
Collection<OntologyIndividual>	getIndividuals(boolean direct)
String	getLocalName()
Object	getModel()
Collection<OntologyTerm>	getParents(boolean direct) Note that any restriction superclasses are not returned, unless they are has_proper_part
Collection<OntologyRestriction>	getRestrictions()
String	getTerm()
String	getUri()
boolean	isRoot()
boolean	isTermObsolete() check to see if the term is obsolete, if it is it should not be used

Methods inherited from interface ubic.basecode.ontology.model.OntologyResource

getLabel

Methods inherited from interface java.lang.Comparable

compareTo

Method Detail

getAlternativeIds

Collection<String> getAlternativeIds()

getAnnotations

Collection<AnnotationProperty> getAnnotations()

getChildren

Collection<OntologyTerm> getChildren(boolean direct)

Parameters:

direct - return only the immediate children; if false, return all of them down to the leaves.

Returns:

getComment

String getComment()

getIndividuals

Collection<OntologyIndividual> getIndividuals()

getIndividuals

Collection<OntologyIndividual> getIndividuals(boolean direct)

getLocalName

String getLocalName()

getModel

Object getModel()

getParents

Collection<OntologyTerm> getParents(boolean direct)

Note that any restriction superclasses are not returned, unless they are has_proper_part

Parameters:

direct -

Returns:

getRestrictions

Collection<OntologyRestriction> getRestrictions()

getTerm

String getTerm()

getUri

String getUri()

Specified by:

getUri in interface OntologyResource

isRoot

boolean isRoot()

isTermObsolete

boolean isTermObsolete()

check to see if the term is obsolete, if it is it should not be used