public class AnnotatorClient extends Object
Modifier and Type | Field and Description |
---|---|
static String |
DOID_ONTOLOGY |
static String |
HP_ONTOLOGY |
Constructor and Description |
---|
AnnotatorClient() |
Modifier and Type | Method and Description |
---|---|
static String |
findLabelForIdentifier(String ontologyId,
String identifier)
return the label associated with an conceptid.
|
static Collection<AnnotatorResponse> |
findTerm(String term) |
static String |
removeSpecialCharacters(String txt) |
public static final String HP_ONTOLOGY
public static final String DOID_ONTOLOGY
public static Collection<AnnotatorResponse> findTerm(String term) throws IOException, ParserConfigurationException, IllegalStateException, SAXException
term
- ParserConfigurationException
SAXException
IllegalStateException
Exception
IOException
public static String findLabelForIdentifier(String ontologyId, String identifier)
ontologyId
- what virtual ontology to useidentifier
- the identifier, knows about: OMIM, DOID, MESHCopyright © 2003–2022 UBC Michael Smith Laboratories. All rights reserved.