Uses of Package
ubic.erminej

Packages that use ubic.erminej

Package	Description
ubic.erminej
ubic.erminej.analysis
ubic.erminej.data
ubic.erminej.gui
ubic.erminej.gui.analysis
ubic.erminej.gui.file
ubic.erminej.gui.geneset
ubic.erminej.gui.geneset.details
ubic.erminej.gui.geneset.edit
ubic.erminej.gui.geneset.table
ubic.erminej.gui.geneset.tree

Classes in ubic.erminej used by ubic.erminej

Class and Description
Settings Basically a wrapper around a Commons Configuration object.
SettingsHolder Holds settings for retrieval but doesn't allow changing them (with a couple of exceptions) or saving them.
SettingsHolder.GeneScoreMethod For the gene set resampling method, how are scores computed for the group?
SettingsHolder.Method Which gene set scoring method to use.
SettingsHolder.MultiProbeHandling What to do when there are multiple values for a gene.
SettingsHolder.MultiTestCorrMethod How to correct for multiple tests.

Classes in ubic.erminej used by ubic.erminej.analysis

Class and Description
SettingsHolder Holds settings for retrieval but doesn't allow changing them (with a couple of exceptions) or saving them.
SettingsHolder.MultiProbeHandling What to do when there are multiple values for a gene.

Classes in ubic.erminej used by ubic.erminej.data

Class and Description
Settings Basically a wrapper around a Commons Configuration object.
SettingsHolder Holds settings for retrieval but doesn't allow changing them (with a couple of exceptions) or saving them.

Classes in ubic.erminej used by ubic.erminej.gui

Class and Description
Settings Basically a wrapper around a Commons Configuration object.
SettingsHolder Holds settings for retrieval but doesn't allow changing them (with a couple of exceptions) or saving them.

Classes in ubic.erminej used by ubic.erminej.gui.analysis

Class and Description
Settings Basically a wrapper around a Commons Configuration object.
SettingsHolder Holds settings for retrieval but doesn't allow changing them (with a couple of exceptions) or saving them.
SettingsHolder.GeneScoreMethod For the gene set resampling method, how are scores computed for the group?
SettingsHolder.Method Which gene set scoring method to use.

Classes in ubic.erminej used by ubic.erminej.gui.file

Class and Description
Settings Basically a wrapper around a Commons Configuration object.

Classes in ubic.erminej used by ubic.erminej.gui.geneset

Class and Description
Settings Basically a wrapper around a Commons Configuration object.

Classes in ubic.erminej used by ubic.erminej.gui.geneset.details

Class and Description
SettingsHolder Holds settings for retrieval but doesn't allow changing them (with a couple of exceptions) or saving them.

Classes in ubic.erminej used by ubic.erminej.gui.geneset.edit

Class and Description
SettingsHolder Holds settings for retrieval but doesn't allow changing them (with a couple of exceptions) or saving them.

Classes in ubic.erminej used by ubic.erminej.gui.geneset.table

Class and Description
Settings Basically a wrapper around a Commons Configuration object.

Classes in ubic.erminej used by ubic.erminej.gui.geneset.tree

Class and Description
Settings Basically a wrapper around a Commons Configuration object.