Uses of Package
ubic.erminej.analysis

Packages that use ubic.erminej.analysis

Package	Description
ubic.erminej
ubic.erminej.analysis
ubic.erminej.gui
ubic.erminej.gui.geneset
ubic.erminej.gui.geneset.table
ubic.erminej.gui.geneset.tree

Classes in ubic.erminej.analysis used by ubic.erminej

Class and Description
GeneSetPvalRun Class that does all the work in doing gene set scoring.

Classes in ubic.erminej.analysis used by ubic.erminej.analysis

Class and Description
AbstractGeneSetPvalGenerator Base implementation of pvalue generator
AbstractLongTask
AbstractResamplingGeneSetScore
GeneSetResamplingBackgroundDistributionGenerator Calculates a background distribution for class scores derived from randomly selected individual gene scores.
GeneSetResamplingPvalGenerator Generates gene set p values using the resampling-based 'experiment score' method of Pavlidis et al.
NullDistributionGenerator

Classes in ubic.erminej.analysis used by ubic.erminej.gui

Class and Description
GeneSetPvalRun Class that does all the work in doing gene set scoring.

Classes in ubic.erminej.analysis used by ubic.erminej.gui.geneset

Class and Description
GeneSetPvalRun Class that does all the work in doing gene set scoring.

Classes in ubic.erminej.analysis used by ubic.erminej.gui.geneset.table

Class and Description
GeneSetPvalRun Class that does all the work in doing gene set scoring.

Classes in ubic.erminej.analysis used by ubic.erminej.gui.geneset.tree

Class and Description
GeneSetPvalRun Class that does all the work in doing gene set scoring.