ubic.gemma.persistence.service.genome.taxon

Interface TaxonDao

All Superinterfaces:

BaseDao<Taxon>, BaseVoEnabledDao<Taxon,TaxonValueObject>, FilteringDao<Taxon>, FilteringVoEnabledDao<Taxon,TaxonValueObject>

All Known Implementing Classes:

TaxonDaoImpl

public interface TaxonDao
extends FilteringVoEnabledDao<Taxon,TaxonValueObject>

See Also:

Taxon

Field Summary

Fields

Modifier and Type	Field and Description
static String	OBJECT_ALIAS

Method Summary

Modifier and Type	Method and Description
Taxon	findByCommonName(String commonName)
Taxon	findByNcbiId(Integer ncbiId)
Taxon	findByScientificName(String scientificName) Searches for a taxon by its scientific name, case insensitive.
Collection<Taxon>	findTaxonUsedInEvidence()

Methods inherited from interface ubic.gemma.persistence.service.FilteringVoEnabledDao

loadValueObjectsPreFilter, loadValueObjectsPreFilter

Methods inherited from interface ubic.gemma.persistence.service.FilteringDao

getElementClass, getObjectAlias

Methods inherited from interface ubic.gemma.persistence.service.BaseVoEnabledDao

loadAllValueObjects, loadValueObject, loadValueObjectById, loadValueObjects, loadValueObjectsByIds

Methods inherited from interface ubic.gemma.persistence.service.BaseDao

countAll, create, create, find, findOrCreate, load, load, loadAll, remove, remove, remove, removeAll, save, save, update, update

Field Detail

OBJECT_ALIAS

static final String OBJECT_ALIAS

See Also:

Constant Field Values

Method Detail

findByCommonName

Taxon findByCommonName(String commonName)

findByScientificName

Taxon findByScientificName(String scientificName)

Searches for a taxon by its scientific name, case insensitive.

Parameters:

scientificName - the scientific name to be matched

Returns:

a Taxon whose scientific name matches the given string.

findTaxonUsedInEvidence

Collection<Taxon> findTaxonUsedInEvidence()

findByNcbiId

Taxon findByNcbiId(Integer ncbiId)