| ubic.gemma.core.analysis.expression |
|
| ubic.gemma.core.analysis.expression.coexpression |
|
| ubic.gemma.core.analysis.expression.coexpression.links |
|
| ubic.gemma.core.analysis.expression.diff |
|
| ubic.gemma.core.analysis.preprocess |
|
| ubic.gemma.core.analysis.preprocess.batcheffects |
|
| ubic.gemma.core.analysis.preprocess.filter |
|
| ubic.gemma.core.analysis.preprocess.normalize |
|
| ubic.gemma.core.analysis.preprocess.svd |
|
| ubic.gemma.core.analysis.report |
|
| ubic.gemma.core.analysis.sequence |
|
| ubic.gemma.core.analysis.service |
|
| ubic.gemma.core.analysis.util |
|
| ubic.gemma.core.annotation.reference |
|
| ubic.gemma.core.apps |
|
| ubic.gemma.core.association.phenotype |
|
| ubic.gemma.core.association.phenotype.fileUpload.literatureEvidence |
|
| ubic.gemma.core.datastructure.matrix |
|
| ubic.gemma.core.expression.experiment |
|
| ubic.gemma.core.expression.experiment.service |
|
| ubic.gemma.core.externalDb |
|
| ubic.gemma.core.genome.gene |
|
| ubic.gemma.core.genome.gene.service |
|
| ubic.gemma.core.image |
|
| ubic.gemma.core.image.aba |
|
| ubic.gemma.core.job |
|
| ubic.gemma.core.job.executor.common |
|
| ubic.gemma.core.job.executor.webapp |
|
| ubic.gemma.core.job.progress |
|
| ubic.gemma.core.loader.association |
|
| ubic.gemma.core.loader.association.phenotype |
|
| ubic.gemma.core.loader.entrez |
|
| ubic.gemma.core.loader.entrez.pubmed |
|
| ubic.gemma.core.loader.expression |
|
| ubic.gemma.core.loader.expression.arrayDesign |
|
| ubic.gemma.core.loader.expression.arrayExpress |
|
| ubic.gemma.core.loader.expression.arrayExpress.util |
|
| ubic.gemma.core.loader.expression.geo |
|
| ubic.gemma.core.loader.expression.geo.fetcher |
|
| ubic.gemma.core.loader.expression.geo.model |
|
| ubic.gemma.core.loader.expression.geo.service |
|
| ubic.gemma.core.loader.expression.geo.util |
|
| ubic.gemma.core.loader.expression.simple |
|
| ubic.gemma.core.loader.expression.simple.model |
|
| ubic.gemma.core.loader.genome |
|
| ubic.gemma.core.loader.genome.gene |
|
| ubic.gemma.core.loader.genome.gene.ncbi |
|
| ubic.gemma.core.loader.genome.gene.ncbi.homology |
|
| ubic.gemma.core.loader.genome.gene.ncbi.model |
|
| ubic.gemma.core.loader.genome.taxon |
|
| ubic.gemma.core.loader.util |
|
| ubic.gemma.core.loader.util.biomart |
|
| ubic.gemma.core.loader.util.converter |
|
| ubic.gemma.core.loader.util.fetcher |
|
| ubic.gemma.core.loader.util.parser |
|
| ubic.gemma.core.loader.util.sdo |
|
| ubic.gemma.core.ontology |
|
| ubic.gemma.core.ontology.providers |
|
| ubic.gemma.core.search |
|
| ubic.gemma.core.search.indexer |
|
| ubic.gemma.core.search.source |
|
| ubic.gemma.core.security.audit |
|
| ubic.gemma.core.security.authentication |
|
| ubic.gemma.core.security.authorization.acl |
|
| ubic.gemma.core.tasks |
|
| ubic.gemma.core.tasks.analysis.coexp |
|
| ubic.gemma.core.tasks.analysis.diffex |
|
| ubic.gemma.core.tasks.analysis.expression |
|
| ubic.gemma.core.tasks.analysis.sequence |
|
| ubic.gemma.core.tasks.maintenance |
|
| ubic.gemma.core.tasks.visualization |
|
| ubic.gemma.core.util |
|
| ubic.gemma.core.util.concurrent |
|
| ubic.gemma.core.visualization |
|
| ubic.gemma.model |
|
| ubic.gemma.model.analysis |
|
| ubic.gemma.model.analysis.expression |
|
| ubic.gemma.model.analysis.expression.coexpression |
|
| ubic.gemma.model.analysis.expression.diff |
|
| ubic.gemma.model.analysis.expression.pca |
|
| ubic.gemma.model.annotations |
|
| ubic.gemma.model.association |
|
| ubic.gemma.model.association.coexpression |
|
| ubic.gemma.model.association.phenotype |
|
| ubic.gemma.model.common |
|
| ubic.gemma.model.common.auditAndSecurity |
|
| ubic.gemma.model.common.auditAndSecurity.curation |
|
| ubic.gemma.model.common.auditAndSecurity.eventType |
|
| ubic.gemma.model.common.description |
|
| ubic.gemma.model.common.measurement |
|
| ubic.gemma.model.common.protocol |
|
| ubic.gemma.model.common.quantitationtype |
|
| ubic.gemma.model.common.search |
|
| ubic.gemma.model.expression |
|
| ubic.gemma.model.expression.arrayDesign |
|
| ubic.gemma.model.expression.bioAssay |
|
| ubic.gemma.model.expression.bioAssayData |
|
| ubic.gemma.model.expression.biomaterial |
|
| ubic.gemma.model.expression.designElement |
|
| ubic.gemma.model.expression.experiment |
|
| ubic.gemma.model.genome |
|
| ubic.gemma.model.genome.biosequence |
|
| ubic.gemma.model.genome.gene |
|
| ubic.gemma.model.genome.gene.phenotype |
|
| ubic.gemma.model.genome.gene.phenotype.valueObject |
|
| ubic.gemma.model.genome.sequenceAnalysis |
|
| ubic.gemma.persistence.model |
|
| ubic.gemma.persistence.model.usertypes |
|
| ubic.gemma.persistence.persister |
|
| ubic.gemma.persistence.retry |
|
| ubic.gemma.persistence.service |
|
| ubic.gemma.persistence.service.analysis |
|
| ubic.gemma.persistence.service.analysis.expression |
|
| ubic.gemma.persistence.service.analysis.expression.coexpression |
|
| ubic.gemma.persistence.service.analysis.expression.diff |
|
| ubic.gemma.persistence.service.analysis.expression.pca |
|
| ubic.gemma.persistence.service.analysis.expression.sampleCoexpression |
|
| ubic.gemma.persistence.service.association |
|
| ubic.gemma.persistence.service.association.coexpression |
|
| ubic.gemma.persistence.service.association.phenotype |
|
| ubic.gemma.persistence.service.association.phenotype.service |
|
| ubic.gemma.persistence.service.common |
|
| ubic.gemma.persistence.service.common.auditAndSecurity |
|
| ubic.gemma.persistence.service.common.auditAndSecurity.curation |
|
| ubic.gemma.persistence.service.common.description |
|
| ubic.gemma.persistence.service.common.measurement |
|
| ubic.gemma.persistence.service.common.protocol |
|
| ubic.gemma.persistence.service.common.quantitationtype |
|
| ubic.gemma.persistence.service.expression.arrayDesign |
|
| ubic.gemma.persistence.service.expression.bioAssay |
|
| ubic.gemma.persistence.service.expression.bioAssayData |
|
| ubic.gemma.persistence.service.expression.biomaterial |
|
| ubic.gemma.persistence.service.expression.designElement |
|
| ubic.gemma.persistence.service.expression.experiment |
|
| ubic.gemma.persistence.service.genome |
|
| ubic.gemma.persistence.service.genome.biosequence |
|
| ubic.gemma.persistence.service.genome.gene |
|
| ubic.gemma.persistence.service.genome.sequenceAnalysis |
|
| ubic.gemma.persistence.service.genome.taxon |
|
| ubic.gemma.persistence.util |
|
| ubic.gemma.persistence.util.monitor |
|
| ubic.gemma.web.controller |
|
| ubic.gemma.web.controller.analysis.expression.coexpression.links |
|
| ubic.gemma.web.controller.analysis.preprocess |
|
| ubic.gemma.web.controller.analysis.sequence |
|
| ubic.gemma.web.controller.coexpressionSearch |
|
| ubic.gemma.web.controller.common |
|
| ubic.gemma.web.controller.common.auditAndSecurity |
|
| ubic.gemma.web.controller.common.auditAndSecurity.recaptcha |
|
| ubic.gemma.web.controller.common.description.bibref |
|
| ubic.gemma.web.controller.common.rss |
|
| ubic.gemma.web.controller.diff |
|
| ubic.gemma.web.controller.expression.arrayDesign |
|
| ubic.gemma.web.controller.expression.bioAssay |
|
| ubic.gemma.web.controller.expression.biomaterial |
|
| ubic.gemma.web.controller.expression.designElement |
|
| ubic.gemma.web.controller.expression.experiment |
|
| ubic.gemma.web.controller.genome |
|
| ubic.gemma.web.controller.genome.gene |
|
| ubic.gemma.web.controller.monitoring |
|
| ubic.gemma.web.controller.visualization |
|
| ubic.gemma.web.feed |
|
| ubic.gemma.web.job.progress |
|
| ubic.gemma.web.listener |
|
| ubic.gemma.web.logging |
|
| ubic.gemma.web.persistence |
|
| ubic.gemma.web.propertyeditor |
|
| ubic.gemma.web.remote |
|
| ubic.gemma.web.scheduler |
|
| ubic.gemma.web.services |
|
| ubic.gemma.web.services.rest |
|
| ubic.gemma.web.services.rest.annotations |
|
| ubic.gemma.web.services.rest.providers |
|
| ubic.gemma.web.services.rest.security |
|
| ubic.gemma.web.services.rest.servlet |
|
| ubic.gemma.web.services.rest.swagger |
|
| ubic.gemma.web.services.rest.swagger.resolvers |
|
| ubic.gemma.web.services.rest.util |
|
| ubic.gemma.web.services.rest.util.args |
|
| ubic.gemma.web.taglib |
|
| ubic.gemma.web.taglib.arrayDesign |
|
| ubic.gemma.web.taglib.common.auditAndSecurity |
|
| ubic.gemma.web.taglib.expression.experiment |
|
| ubic.gemma.web.tasks.analysis.sequence |
|
| ubic.gemma.web.util |
|
| ubic.gemma.web.util.upload |
|
| ubic.gemma.web.view |
|