ubic.gemma.model.genome

Class Taxon

java.lang.Object

ubic.gemma.model.genome.Taxon

All Implemented Interfaces:

Serializable, Identifiable

public class Taxon
extends Object
implements Identifiable, Serializable

See Also:

Serialized Form

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	Taxon.Factory

Constructor Summary

Constructors

Constructor and Description
Taxon() No-arg constructor added to satisfy javabean contract

Method Summary

Modifier and Type	Method and Description
boolean	equals(Object object) Returns true if the argument is a Taxon instance and all identifiers for this entity equal the identifiers of the argument entity.
String	getCommonName()
ExternalDatabase	getExternalDatabase()
Long	getId()
Boolean	getIsGenesUsable()
Integer	getNcbiId()
String	getScientificName()
Integer	getSecondaryNcbiId()
int	hashCode()
void	setCommonName(String commonName)
void	setExternalDatabase(ExternalDatabase externalDatabase)
void	setId(Long id)
void	setIsGenesUsable(Boolean isGenesUsable)
void	setNcbiId(Integer ncbiId)
void	setScientificName(String scientificName)
void	setSecondaryNcbiId(Integer secondaryNcbiId)
String	toString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

Taxon

public Taxon()

No-arg constructor added to satisfy javabean contract

Method Detail

hashCode

public int hashCode()

Overrides:

hashCode in class Object

equals

public boolean equals(Object object)

Returns true if the argument is a Taxon instance and all identifiers for this entity equal the identifiers of the argument entity. Returns false otherwise.

Overrides:

equals in class Object

toString

public String toString()

Overrides:

toString in class Object

See Also:

toString()

getCommonName

public String getCommonName()

setCommonName

public void setCommonName(String commonName)

getExternalDatabase

public ExternalDatabase getExternalDatabase()

setExternalDatabase

public void setExternalDatabase(ExternalDatabase externalDatabase)

getId

public Long getId()

Specified by:

getId in interface Identifiable

setId

public void setId(Long id)

getIsGenesUsable

public Boolean getIsGenesUsable()

setIsGenesUsable

public void setIsGenesUsable(Boolean isGenesUsable)

getNcbiId

public Integer getNcbiId()

setNcbiId

public void setNcbiId(Integer ncbiId)

getScientificName

public String getScientificName()

setScientificName

public void setScientificName(String scientificName)

getSecondaryNcbiId

public Integer getSecondaryNcbiId()

Returns:

Represents a "secondary" Taxon id that is used for this species. The main example where this is necessary is budding yeast, which is id 4932 in GEO but genes use the (strain-specific) ID 559292.

setSecondaryNcbiId

public void setSecondaryNcbiId(Integer secondaryNcbiId)