Uses of Interface
ubic.basecode.ontology.model.OntologyTerm

Packages that use OntologyTerm

Package	Description
ubic.basecode.ontology.model
ubic.basecode.ontology.providers
ubic.basecode.ontology.search

Uses of OntologyTerm in ubic.basecode.ontology.model

Subinterfaces of OntologyTerm in ubic.basecode.ontology.model

Modifier and Type	Interface and Description
interface	OntologyCardinalityRestriction
interface	OntologyClassRestriction
interface	OntologyDatatypeRestriction
interface	OntologyRestriction Note: this only handle 'someof' and 'allof' restrictions, not cardinality.

Classes in ubic.basecode.ontology.model that implement OntologyTerm

Modifier and Type	Class and Description
class	OntologyCardinalityRestrictionImpl
class	OntologyClassRestrictionImpl
class	OntologyDatatypeRestrictionImpl
class	OntologyRestrictionImpl Represents a restriction on instances that are subclasses of this.
class	OntologyTermImpl Represents a class in an ontology
class	OntologyTermSimple A light-weight version of OntologyTerms.

Methods in ubic.basecode.ontology.model that return OntologyTerm

Modifier and Type	Method and Description
protected OntologyTerm	OntologyTermImpl.fromOntClass(com.hp.hpl.jena.ontology.OntClass ontClass)
OntologyTerm	OntologyIndividualImpl.getInstanceOf()
OntologyTerm	OntologyIndividual.getInstanceOf() Return the term that this is an instance of.
OntologyTerm	ClassStatement.getObject()
OntologyTerm	OntologyClassRestrictionImpl.getRestrictedTo()
OntologyTerm	OntologyClassRestriction.getRestrictedTo()
OntologyTerm	CharacteristicStatement.getSubject()

Methods in ubic.basecode.ontology.model that return types with arguments of type OntologyTerm

Modifier and Type	Method and Description
Collection<OntologyTerm>	OntologyTermImpl.getChildren(boolean direct)
Collection<OntologyTerm>	OntologyTermSimple.getChildren(boolean direct)
Collection<OntologyTerm>	OntologyTerm.getChildren(boolean direct)
Collection<OntologyTerm>	OntologyTermImpl.getParents(boolean direct)
Collection<OntologyTerm>	OntologyTermSimple.getParents(boolean direct)
Collection<OntologyTerm>	OntologyTerm.getParents(boolean direct) Note that any restriction superclasses are not returned, unless they are has_proper_part
Collection<OntologyTerm>	ObjectPropertyImpl.getRange()
Collection<OntologyTerm>	ObjectProperty.getRange()

Uses of OntologyTerm in ubic.basecode.ontology.providers

Fields in ubic.basecode.ontology.providers with type parameters of type OntologyTerm

Modifier and Type	Field and Description
protected Map<String,OntologyTerm>	AbstractOntologyService.terms

Methods in ubic.basecode.ontology.providers that return OntologyTerm

Modifier and Type	Method and Description
OntologyTerm	AbstractOntologyService.findUsingAlternativeId(String alternativeId)
OntologyTerm	AbstractOntologyService.getTerm(String uri) Looks for a OntologyTerm that has the match in URI given

Methods in ubic.basecode.ontology.providers that return types with arguments of type OntologyTerm

Modifier and Type	Method and Description
Collection<OntologyTerm>	AbstractOntologyService.findTerm(String search) Looks for any ontologyTerms that match the given search string.

Uses of OntologyTerm in ubic.basecode.ontology.search

Methods in ubic.basecode.ontology.search that return types with arguments of type OntologyTerm

Modifier and Type	Method and Description
static Collection<OntologyTerm>	OntologySearch.matchClasses(com.hp.hpl.jena.ontology.OntModel model, SearchIndex index, String queryString) Find classes that match the query string.