ubic.gemma.persistence.service.expression.bioAssayData

Class DesignElementDataVectorDaoImpl<T extends DesignElementDataVector>

java.lang.Object

ubic.gemma.persistence.service.AbstractDao<T>

ubic.gemma.persistence.service.expression.bioAssayData.DesignElementDataVectorDaoImpl<T>

All Implemented Interfaces:

BaseDao<T>, DesignElementDataVectorDao<T>

Direct Known Subclasses:

ProcessedExpressionDataVectorDaoImpl, RawExpressionDataVectorDaoImpl

public abstract class DesignElementDataVectorDaoImpl<T extends DesignElementDataVector>
extends AbstractDao<T>
implements DesignElementDataVectorDao<T>

Author:

pavlidis

See Also:

DesignElementDataVector

Field Summary

Fields inherited from class ubic.gemma.persistence.service.AbstractDao

elementClass, log

Method Summary

Modifier and Type	Method and Description
Collection<T>	find(QuantitationType quantitationType)
Collection<DesignElementDataVector>	findRawAndProcessed(BioAssayDimension dim)
Collection<DesignElementDataVector>	findRawAndProcessed(QuantitationType qt)
void	removeRawAndProcessed(Collection<DesignElementDataVector> vectors)
void	thaw(Collection<T> designElementDataVectors)
void	thaw(T designElementDataVector)
void	thawRawAndProcessed(Collection<DesignElementDataVector> designElementDataVectors)

Methods inherited from class ubic.gemma.persistence.service.AbstractDao

countAll, create, create, find, findByProperty, findByPropertyIn, findOneByProperty, findOrCreate, flush, flushAndClear, getElementClass, getSessionFactory, load, load, loadAll, reattach, reattach, remove, remove, remove, removeAll, save, save, update, update

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ubic.gemma.persistence.service.expression.bioAssayData.DesignElementDataVectorDao

create, create, find, find, find, find, findByExpressionExperiment, load, loadAll, removeDataForCompositeSequence, removeDataForQuantitationType

Methods inherited from interface ubic.gemma.persistence.service.BaseDao

countAll, find, findOrCreate, getElementClass, load, remove, remove, remove, removeAll, save, save, update, update

Method Detail

removeRawAndProcessed

public final void removeRawAndProcessed(Collection<DesignElementDataVector> vectors)

Specified by:

removeRawAndProcessed in interface DesignElementDataVectorDao<T extends DesignElementDataVector>

findRawAndProcessed

public final Collection<DesignElementDataVector> findRawAndProcessed(BioAssayDimension dim)

Specified by:

findRawAndProcessed in interface DesignElementDataVectorDao<T extends DesignElementDataVector>

findRawAndProcessed

public final Collection<DesignElementDataVector> findRawAndProcessed(QuantitationType qt)

Specified by:

findRawAndProcessed in interface DesignElementDataVectorDao<T extends DesignElementDataVector>

thawRawAndProcessed

public void thawRawAndProcessed(Collection<DesignElementDataVector> designElementDataVectors)

Specified by:

thawRawAndProcessed in interface DesignElementDataVectorDao<T extends DesignElementDataVector>

thaw

public void thaw(Collection<T> designElementDataVectors)

Specified by:

thaw in interface DesignElementDataVectorDao<T extends DesignElementDataVector>

thaw

public void thaw(T designElementDataVector)

Specified by:

thaw in interface DesignElementDataVectorDao<T extends DesignElementDataVector>

Parameters:

designElementDataVector - Thaws associations of the given DesignElementDataVector

find

public Collection<T> find(QuantitationType quantitationType)

Specified by:

find in interface DesignElementDataVectorDao<T extends DesignElementDataVector>