DesignElementDataVectorDao (Gemma 1.29.8 API)

All Superinterfaces:

BaseDao<T>

All Known Subinterfaces:

ProcessedExpressionDataVectorDao, RawExpressionDataVectorDao

All Known Implementing Classes:

DesignElementDataVectorDaoImpl, ProcessedExpressionDataVectorDaoImpl, RawExpressionDataVectorDaoImpl
```
@Repository
public interface DesignElementDataVectorDao<T extends DesignElementDataVector>
extends BaseDao<T>
```
See Also:

DesignElementDataVector

Method Summary

All Methods Instance Methods Abstract Methods
Modifier and Type	Method and Description
`Collection<T>`	`create(Collection<T> entities)` Creates a new instance of ubic.gemma.model.expression.bioAssayData.DesignElementDataVector and adds from the passed in `entities` collection
`T`	`create(T designElementDataVector)` Create an object.
`Collection<T>`	`find(ArrayDesign arrayDesign, QuantitationType quantitationType)`
`Collection<T>`	`find(BioAssayDimension bioAssayDimension)`
`Collection<T>`	`find(Collection<CompositeSequence> designElements, QuantitationType quantitationType)`
`Collection<T>`	`find(Collection<QuantitationType> quantitationTypes)`
`Collection<T>`	`find(QuantitationType quantitationType)`
`Collection<T>`	`findByExpressionExperiment(ExpressionExperiment ee, QuantitationType quantitationType)` Find expression vectors by `ExpressionExperiment`.
`Collection<DesignElementDataVector>`	`findRawAndProcessed(BioAssayDimension dim)`
`Collection<DesignElementDataVector>`	`findRawAndProcessed(QuantitationType qt)`
`T`	`load(Long id)` Loads the entity with given id from the persistent storage.
`Collection<T>`	`loadAll()` Loads all entities of type `DesignElementDataVector`.
`void`	`removeDataForCompositeSequence(CompositeSequence compositeSequence)`
`void`	`removeDataForQuantitationType(QuantitationType quantitationType)`
`void`	`removeRawAndProcessed(Collection<DesignElementDataVector> vectors)`
`void`	`thaw(Collection<T> designElementDataVectors)`
`void`	`thaw(T designElementDataVector)`
`void`	`thawRawAndProcessed(Collection<DesignElementDataVector> designElementDataVectors)`

Methods inherited from interface ubic.gemma.persistence.service.BaseDao
countAll, find, findOrCreate, getElementClass, load, remove, remove, remove, removeAll, save, save, update, update

- Method Detail
  - removeRawAndProcessed
```
void removeRawAndProcessed(Collection<DesignElementDataVector> vectors)
```
  - findRawAndProcessed
```
Collection<DesignElementDataVector> findRawAndProcessed(BioAssayDimension dim)
```
  - findRawAndProcessed
```
Collection<DesignElementDataVector> findRawAndProcessed(QuantitationType qt)
```
  - thawRawAndProcessed
```
void thawRawAndProcessed(Collection<DesignElementDataVector> designElementDataVectors)
```
  - create
```
Collection<T> create(Collection<T> entities)
```
    Creates a new instance of ubic.gemma.model.expression.bioAssayData.DesignElementDataVector and adds from the passed in entities collection
    
    Specified by:
    
    create in interface BaseDao<T extends DesignElementDataVector>
    
    Parameters:
    
    entities - the collection of ubic.gemma.model.expression.bioAssayData.DesignElementDataVector instances to create.
    
    Returns:
    
    the created instances.
  - create
```
T create(T designElementDataVector)
```
    Description copied from interface: BaseDao
    
    Create an object. If the entity type is immutable, this may also remove any existing entities identified by an appropriate 'find' method.
    
    Specified by:
    
    create in interface BaseDao<T extends DesignElementDataVector>
    
    Parameters:
    
    designElementDataVector - DE data vector
    
    Returns:
    
    Creates an instance of ubic.gemma.model.expression.bioAssayData.DesignElementDataVector and adds it to the persistent store.
  - load
```
T load(Long id)
```
    Description copied from interface: BaseDao
    
    Loads the entity with given id from the persistent storage.
    
    Specified by:
    
    load in interface BaseDao<T extends DesignElementDataVector>
    
    Parameters:
    
    id - id
    
    Returns:
    
    Loads an instance of ubic.gemma.model.expression.bioAssayData.DesignElementDataVector from the persistent store.
  - loadAll
```
Collection<T> loadAll()
```
    Loads all entities of type DesignElementDataVector.
    
    Specified by:
    
    loadAll in interface BaseDao<T extends DesignElementDataVector>
    
    Returns:
    
    the loaded entities.
  - thaw
```
void thaw(Collection<T> designElementDataVectors)
```
  - thaw
```
void thaw(T designElementDataVector)
```
    Parameters:
    
    designElementDataVector - Thaws associations of the given DesignElementDataVector
  - find
```
Collection<T> find(BioAssayDimension bioAssayDimension)
```
  - find
```
Collection<T> find(Collection<QuantitationType> quantitationTypes)
```
  - find
```
Collection<T> find(QuantitationType quantitationType)
```
  - find
```
Collection<T> find(ArrayDesign arrayDesign,
                   QuantitationType quantitationType)
```
  - find
```
Collection<T> find(Collection<CompositeSequence> designElements,
                   QuantitationType quantitationType)
```
  - findByExpressionExperiment
```
Collection<T> findByExpressionExperiment(ExpressionExperiment ee,
                                         QuantitationType quantitationType)
```
    Find expression vectors by ExpressionExperiment.
  - removeDataForCompositeSequence
```
void removeDataForCompositeSequence(CompositeSequence compositeSequence)
```
  - removeDataForQuantitationType
```
void removeDataForQuantitationType(QuantitationType quantitationType)
```

Interface DesignElementDataVectorDao<T extends DesignElementDataVector>

Method Summary

Methods inherited from interface ubic.gemma.persistence.service.BaseDao

Method Detail

removeRawAndProcessed

findRawAndProcessed

findRawAndProcessed

thawRawAndProcessed

create

create

load

loadAll

thaw

thaw

find

find

find

find

find

findByExpressionExperiment

removeDataForCompositeSequence

removeDataForQuantitationType