ubic.gemma.persistence.service.expression.experiment

Class FactorValueDaoImpl

java.lang.Object

ubic.gemma.persistence.service.AbstractDao<O>

ubic.gemma.persistence.service.AbstractVoEnabledDao<O,VO>

ubic.gemma.persistence.service.AbstractFilteringVoEnabledDao<O,VO>

ubic.gemma.persistence.service.AbstractQueryFilteringVoEnabledDao<FactorValue,FactorValueValueObject>

ubic.gemma.persistence.service.expression.experiment.FactorValueDaoImpl

All Implemented Interfaces:

BaseDao<FactorValue>, BaseVoEnabledDao<FactorValue,FactorValueValueObject>, FactorValueDao, FilteringDao<FactorValue>, FilteringVoEnabledDao<FactorValue,FactorValueValueObject>

@Repository
public class FactorValueDaoImpl
extends AbstractQueryFilteringVoEnabledDao<FactorValue,FactorValueValueObject>
implements FactorValueDao

Base Spring DAO Class: is able to create, update, remove, load, and find objects of type ubic.gemma.model.expression.experiment.FactorValue.

Nested Class Summary

Nested classes/interfaces inherited from class ubic.gemma.persistence.service.AbstractQueryFilteringVoEnabledDao

AbstractQueryFilteringVoEnabledDao.QueryHint

Field Summary

Fields inherited from class ubic.gemma.persistence.service.AbstractVoEnabledDao

REPORT_SLOW_QUERY_AFTER_MS

Fields inherited from class ubic.gemma.persistence.service.AbstractDao

elementClass, log

Constructor Summary

Constructors

Constructor and Description
FactorValueDaoImpl(SessionFactory sessionFactory)

Method Summary

Modifier and Type	Method and Description
protected FactorValueValueObject	doLoadValueObject(FactorValue entity) Load a value object for a given entity.
FactorValue	find(FactorValue factorValue) Does a look up for the given entity in the persistent storage, usually looking for a specific identifier ( either id or a string property).
Collection<FactorValue>	findByValue(String valuePrefix) Locate based on string value of the value.
protected Query	getLoadValueObjectsQuery(Filters filters, Sort sort, EnumSet<AbstractQueryFilteringVoEnabledDao.QueryHint> hints) Produce a query for retrieving value objects after applying a set of filters and a given ordering.
void	remove(FactorValue factorValue) Remove a persistent instance

Methods inherited from class ubic.gemma.persistence.service.AbstractQueryFilteringVoEnabledDao

getCountValueObjectsQuery, loadValueObjectsPreFilter, loadValueObjectsPreFilter, processLoadValueObjectsQueryResult

Methods inherited from class ubic.gemma.persistence.service.AbstractFilteringVoEnabledDao

getObjectAlias, loadAllValueObjects, loadValueObject, loadValueObjectById, loadValueObjects, loadValueObjectsByIds

Methods inherited from class ubic.gemma.persistence.service.AbstractVoEnabledDao

doLoadValueObjects

Methods inherited from class ubic.gemma.persistence.service.AbstractDao

countAll, create, create, findByProperty, findByPropertyIn, findOneByProperty, findOrCreate, flush, flushAndClear, getElementClass, getSessionFactory, load, load, loadAll, reattach, reattach, remove, remove, removeAll, save, save, update, update

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ubic.gemma.persistence.service.FilteringVoEnabledDao

loadValueObjectsPreFilter, loadValueObjectsPreFilter

Methods inherited from interface ubic.gemma.persistence.service.FilteringDao

getElementClass, getObjectAlias

Methods inherited from interface ubic.gemma.persistence.service.BaseVoEnabledDao

loadAllValueObjects, loadValueObject, loadValueObjectById, loadValueObjects, loadValueObjectsByIds

Methods inherited from interface ubic.gemma.persistence.service.BaseDao

countAll, create, create, findOrCreate, load, load, loadAll, remove, remove, removeAll, save, save, update, update

Constructor Detail

FactorValueDaoImpl

@Autowired
public FactorValueDaoImpl(SessionFactory sessionFactory)

Method Detail

findByValue

public Collection<FactorValue> findByValue(String valuePrefix)

Description copied from interface: FactorValueDao

Locate based on string value of the value.

Specified by:

findByValue in interface FactorValueDao

Parameters:

valuePrefix - value prefix

Returns:

collection of factor values

remove

public void remove(@Nullable
                   FactorValue factorValue)

Description copied from interface: BaseDao

Remove a persistent instance

Specified by:

remove in interface BaseDao<FactorValue>

Overrides:

remove in class AbstractDao<FactorValue>

Parameters:

factorValue - the entity to be removed

find

public FactorValue find(FactorValue factorValue)

Description copied from interface: BaseDao

Does a look up for the given entity in the persistent storage, usually looking for a specific identifier ( either id or a string property).

Specified by:

find in interface BaseDao<FactorValue>

Overrides:

find in class AbstractDao<FactorValue>

Parameters:

factorValue - the entity to look for.

Returns:

an entity that was found in the persistent storage, or null if no such entity was found.

doLoadValueObject

protected FactorValueValueObject doLoadValueObject(FactorValue entity)

Description copied from class: AbstractVoEnabledDao

Load a value object for a given entity.

This should be fast and efficient, and avoid any database query or post-processing. If you need to perform additional queries, consider overriding AbstractVoEnabledDao.loadValueObject(Identifiable) or AbstractVoEnabledDao.loadValueObjects(Collection).

Specified by:

doLoadValueObject in class AbstractVoEnabledDao<FactorValue,FactorValueValueObject>

getLoadValueObjectsQuery

protected Query getLoadValueObjectsQuery(@Nullable
                                         Filters filters,
                                         @Nullable
                                         Sort sort,
                                         EnumSet<AbstractQueryFilteringVoEnabledDao.QueryHint> hints)

Description copied from class: AbstractQueryFilteringVoEnabledDao

Produce a query for retrieving value objects after applying a set of filters and a given ordering. Note that if your implementation does not produce a List of O when Query.list() is invoked, you must override AbstractQueryFilteringVoEnabledDao.processLoadValueObjectsQueryResult(Object).

Specified by:

getLoadValueObjectsQuery in class AbstractQueryFilteringVoEnabledDao<FactorValue,FactorValueValueObject>

Returns:

a Query that produce a list of O