ubic.gemma.persistence.service.common.auditAndSecurity.curation

Class AbstractCuratableDao<C extends Curatable,VO extends AbstractCuratableValueObject<C>>

java.lang.Object

ubic.gemma.persistence.service.AbstractDao<O>

ubic.gemma.persistence.service.AbstractVoEnabledDao<O,VO>

ubic.gemma.persistence.service.AbstractFilteringVoEnabledDao<O,VO>

ubic.gemma.persistence.service.AbstractQueryFilteringVoEnabledDao<C,VO>

ubic.gemma.persistence.service.common.auditAndSecurity.curation.AbstractCuratableDao<C,VO>

All Implemented Interfaces:

BaseDao<C>, BaseVoEnabledDao<C,VO>, CuratableDao<C,VO>, FilteringDao<C>, FilteringVoEnabledDao<C,VO>

Direct Known Subclasses:

ArrayDesignDaoImpl, ExpressionExperimentDaoImpl

public abstract class AbstractCuratableDao<C extends Curatable,VO extends AbstractCuratableValueObject<C>>
extends AbstractQueryFilteringVoEnabledDao<C,VO>
implements CuratableDao<C,VO>

Created by tesarst on 07/03/17. DAO covering methods common to all Curatable objects.

Author:

tesarst

Nested Class Summary

Nested classes/interfaces inherited from class ubic.gemma.persistence.service.AbstractQueryFilteringVoEnabledDao

AbstractQueryFilteringVoEnabledDao.QueryHint

Field Summary

Fields inherited from class ubic.gemma.persistence.service.AbstractVoEnabledDao

REPORT_SLOW_QUERY_AFTER_MS

Fields inherited from class ubic.gemma.persistence.service.AbstractDao

elementClass, log

Constructor Summary

Constructors

Modifier	Constructor and Description
protected	AbstractCuratableDao(String objectAlias, Class<C> elementClass, SessionFactory sessionFactory)

Method Summary

Modifier and Type	Method and Description
protected void	addEventsToMap(Map<Long,Collection<AuditEvent>> eventMap, Long id, AuditEvent event)
protected void	addNonTroubledFilter(Filters filters, String objectAlias) Restrict results to non-troubled curatable entities for non-administrators
C	create(C entity) Create an object.
Collection<C>	findByName(String name) Finds an entity by given name.
C	findByShortName(String name) Finds an entity by given short name.

Methods inherited from class ubic.gemma.persistence.service.AbstractQueryFilteringVoEnabledDao

getCountValueObjectsQuery, getLoadValueObjectsQuery, loadValueObjectsPreFilter, loadValueObjectsPreFilter, processLoadValueObjectsQueryResult

Methods inherited from class ubic.gemma.persistence.service.AbstractFilteringVoEnabledDao

getObjectAlias, loadAllValueObjects, loadValueObject, loadValueObjectById, loadValueObjects, loadValueObjectsByIds

Methods inherited from class ubic.gemma.persistence.service.AbstractVoEnabledDao

doLoadValueObject, doLoadValueObjects

Methods inherited from class ubic.gemma.persistence.service.AbstractDao

countAll, create, find, findByProperty, findByPropertyIn, findOneByProperty, findOrCreate, flush, flushAndClear, getElementClass, getSessionFactory, load, load, loadAll, reattach, reattach, remove, remove, remove, removeAll, save, save, update, update

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ubic.gemma.persistence.service.FilteringVoEnabledDao

loadValueObjectsPreFilter, loadValueObjectsPreFilter

Methods inherited from interface ubic.gemma.persistence.service.FilteringDao

getElementClass, getObjectAlias

Methods inherited from interface ubic.gemma.persistence.service.BaseVoEnabledDao

loadAllValueObjects, loadValueObject, loadValueObjectById, loadValueObjects, loadValueObjectsByIds

Methods inherited from interface ubic.gemma.persistence.service.BaseDao

countAll, create, find, findOrCreate, load, load, loadAll, remove, remove, remove, removeAll, save, save, update, update

Constructor Detail

AbstractCuratableDao

protected AbstractCuratableDao(String objectAlias,
                               Class<C> elementClass,
                               SessionFactory sessionFactory)

Method Detail

create

public C create(C entity)

Description copied from interface: BaseDao

Create an object. If the entity type is immutable, this may also remove any existing entities identified by an appropriate 'find' method.

Specified by:

create in interface BaseDao<C extends Curatable>

Overrides:

create in class AbstractDao<C extends Curatable>

Parameters:

entity - the entity to create

Returns:

the persistent version of the entity

findByName

public Collection<C> findByName(String name)

Finds an entity by given name.

Specified by:

findByName in interface CuratableDao<C extends Curatable,VO extends AbstractCuratableValueObject<C>>

Parameters:

name - name of the entity to be found.

Returns:

entity with given name, or null if such entity does not exist.

findByShortName

public C findByShortName(String name)

Finds an entity by given short name.

Specified by:

findByShortName in interface CuratableDao<C extends Curatable,VO extends AbstractCuratableValueObject<C>>

Parameters:

name - short name of the entity to be found.

Returns:

entity with given short name, or null if such entity does not exist.

addEventsToMap

protected void addEventsToMap(Map<Long,Collection<AuditEvent>> eventMap,
                              Long id,
                              AuditEvent event)

addNonTroubledFilter

protected void addNonTroubledFilter(Filters filters,
                                    @Nullable
                                    String objectAlias)

Restrict results to non-troubled curatable entities for non-administrators