ubic.gemma.persistence.service.analysis.expression.coexpression

Class CoexpressionAnalysisDaoImpl

java.lang.Object

ubic.gemma.persistence.service.AbstractDao<T>

ubic.gemma.persistence.service.analysis.AnalysisDaoBase<CoexpressionAnalysis>

ubic.gemma.persistence.service.analysis.expression.coexpression.CoexpressionAnalysisDaoImpl

All Implemented Interfaces:

AnalysisDao<CoexpressionAnalysis>, CoexpressionAnalysisDao, BaseDao<CoexpressionAnalysis>

@Repository
public class CoexpressionAnalysisDaoImpl
extends AnalysisDaoBase<CoexpressionAnalysis>
implements CoexpressionAnalysisDao

Base Spring DAO Class: is able to create, update, remove, load, and find objects of type ubic.gemma.model.analysis.expression.coexpression.CoexpressionAnalysis.

See Also:

CoexpressionAnalysis

Field Summary

Fields inherited from class ubic.gemma.persistence.service.AbstractDao

elementClass, log

Constructor Summary

Constructors

Constructor and Description
CoexpressionAnalysisDaoImpl(SessionFactory sessionFactory)

Method Summary

Modifier and Type	Method and Description
CoexpCorrelationDistribution	getCoexpCorrelationDistribution(ExpressionExperiment expressionExperiment)
Collection<Long>	getExperimentsWithAnalysis(Collection<Long> idsToFilter)
Boolean	hasCoexpCorrelationDistribution(ExpressionExperiment ee)

Methods inherited from class ubic.gemma.persistence.service.analysis.AnalysisDaoBase

findByInvestigation, findByInvestigations, findByName, findByTaxon

Methods inherited from class ubic.gemma.persistence.service.AbstractDao

countAll, create, create, find, findByProperty, findByPropertyIn, findOneByProperty, findOrCreate, flush, flushAndClear, getElementClass, getSessionFactory, load, load, loadAll, reattach, reattach, remove, remove, remove, removeAll, save, save, update, update

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ubic.gemma.persistence.service.analysis.AnalysisDao

findByInvestigation, findByInvestigations, findByName, findByTaxon

Methods inherited from interface ubic.gemma.persistence.service.BaseDao

countAll, create, create, find, findOrCreate, getElementClass, load, load, loadAll, remove, remove, remove, removeAll, save, save, update, update

Constructor Detail

CoexpressionAnalysisDaoImpl

@Autowired
public CoexpressionAnalysisDaoImpl(SessionFactory sessionFactory)

Method Detail

getCoexpCorrelationDistribution

public CoexpCorrelationDistribution getCoexpCorrelationDistribution(ExpressionExperiment expressionExperiment)

Specified by:

getCoexpCorrelationDistribution in interface CoexpressionAnalysisDao

getExperimentsWithAnalysis

public Collection<Long> getExperimentsWithAnalysis(Collection<Long> idsToFilter)

Specified by:

getExperimentsWithAnalysis in interface CoexpressionAnalysisDao

hasCoexpCorrelationDistribution

public Boolean hasCoexpCorrelationDistribution(ExpressionExperiment ee)

Specified by:

hasCoexpCorrelationDistribution in interface CoexpressionAnalysisDao