GeneCoexpressionNodeDegreeValueObject (Gemma 1.29.4 API)

java.lang.Object
- ubic.gemma.model.association.coexpression.GeneCoexpressionNodeDegreeValueObject

All Implemented Interfaces:

Serializable
```
public class GeneCoexpressionNodeDegreeValueObject
extends Object
implements Serializable
```
Represents a GeneCoexpressionNodeDegree

Author:

Paul

See Also:

Serialized Form

Constructor Summary

Constructors
Constructor and Description

GeneCoexpressionNodeDegreeValueObject()

GeneCoexpressionNodeDegreeValueObject(GeneCoexpressionNodeDegree entity)

Constructors
Constructor and Description
`GeneCoexpressionNodeDegreeValueObject()`
`GeneCoexpressionNodeDegreeValueObject(GeneCoexpressionNodeDegree entity)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`double[]`	`asDoubleArrayNegRanks()`
`double[]`	`asDoubleArrayPosRanks()`
`int[]`	`asIntArrayNeg()`
`int[]`	`asIntArrayPos()`
`void`	`clear()` Used during recomputation only.
`boolean`	`equals(Object obj)`
`Long`	`getGeneId()`
`Integer`	`getLinksWithExactSupport(Integer support, boolean positive)`
`Integer`	`getLinksWithMinimumSupport(int i)`
`Integer`	`getLinksWithMinimumSupport(Integer support, boolean positive)`
`int`	`getMaxSupportNeg()`
`int`	`getMaxSupportPos()`
`Double`	`getRankAtMinimumSupport(Integer support, boolean positive)`
`int`	`hashCode()`
`void`	`increment(Integer support, boolean positive)`
`GeneCoexpressionNodeDegree`	`toEntity()`
`String`	`toString()`
`int`	`total()` Equivalent to getLinksWithMinimumSupport( 0 )

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, wait, wait, wait

- Constructor Detail
  - GeneCoexpressionNodeDegreeValueObject
```
public GeneCoexpressionNodeDegreeValueObject()
```
  - GeneCoexpressionNodeDegreeValueObject
```
public GeneCoexpressionNodeDegreeValueObject(GeneCoexpressionNodeDegree entity)
```
- Method Detail
  - asDoubleArrayNegRanks
```
public double[] asDoubleArrayNegRanks()
```
  - asDoubleArrayPosRanks
```
public double[] asDoubleArrayPosRanks()
```
  - asIntArrayNeg
```
public int[] asIntArrayNeg()
```
    Returns:
    
    counts at each level of support, starting from 0 (which will be 0), up to the maximum support.
  - asIntArrayPos
```
public int[] asIntArrayPos()
```
    Returns:
    
    counts at each level of support, starting from 0 (which will be 0), up to the maximum support.
  - getGeneId
```
public Long getGeneId()
```
  - getLinksWithExactSupport
```
public Integer getLinksWithExactSupport(Integer support,
                                        boolean positive)
```
    Parameters:
    
    support - value
    
    positive - positive
    
    Returns:
    
    how many links have this much support (specifically).
  - getLinksWithMinimumSupport
```
public Integer getLinksWithMinimumSupport(int i)
```
    Parameters:
    
    i - support
    
    Returns:
    
    total number of links (this is just the total of positive and negative; if some of those are with the same genes it's a double count, sorry)
  - getLinksWithMinimumSupport
```
public Integer getLinksWithMinimumSupport(Integer support,
                                          boolean positive)
```
    Parameters:
    
    support - threshold
    
    positive - positive
    
    Returns:
    
    how many links have at least this much support (cumulative)
  - getMaxSupportNeg
```
public int getMaxSupportNeg()
```
  - getMaxSupportPos
```
public int getMaxSupportPos()
```
    Returns:
    
    the largest value for support for this gene
  - getRankAtMinimumSupport
```
public Double getRankAtMinimumSupport(Integer support,
                                      boolean positive)
```
  - hashCode
```
public int hashCode()
```
    Overrides:
    
    hashCode in class Object
  - equals
```
public boolean equals(Object obj)
```
    Overrides:
    
    equals in class Object
  - toString
```
public String toString()
```
    Overrides:
    
    toString in class Object
  - increment
```
public void increment(Integer support,
                      boolean positive)
```
  - total
```
public int total()
```
    Equivalent to getLinksWithMinimumSupport( 0 )
    
    Returns:
    
    how many links this gene has in total, across all levels of support (positive and negative correlations combined)
  - clear
```
public void clear()
```
    Used during recomputation only.
  - toEntity
```
public GeneCoexpressionNodeDegree toEntity()
```

Class GeneCoexpressionNodeDegreeValueObject

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

GeneCoexpressionNodeDegreeValueObject

GeneCoexpressionNodeDegreeValueObject

Method Detail

asDoubleArrayNegRanks

asDoubleArrayPosRanks

asIntArrayNeg

asIntArrayPos

getGeneId

getLinksWithExactSupport

getLinksWithMinimumSupport

getLinksWithMinimumSupport

getMaxSupportNeg

getMaxSupportPos

getRankAtMinimumSupport

hashCode

equals

toString

increment

total

clear

toEntity