ubic.gemma.core.analysis.preprocess.svd

Class SVDServiceImpl

java.lang.Object

ubic.gemma.core.analysis.preprocess.svd.SVDServiceImpl

All Implemented Interfaces:

SVDService

@Service
public class SVDServiceImpl
extends Object
implements SVDService

Perform SVD on expression data and store the results.

Constructor Summary

Constructors

Constructor and Description
SVDServiceImpl()

Method Summary

Modifier and Type	Method and Description
SVDValueObject	getSvd(Long eeId) Get the SVD information for experiment with id given.
SVDValueObject	getSvdFactorAnalysis(Long eeId)
Map<ProbeLoading,DoubleVectorValueObject>	getTopLoadedVectors(Long eeId, int component, int count)
boolean	hasPca(Long eeId)
SVDValueObject	svd(Long eeId)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SVDServiceImpl

public SVDServiceImpl()

Method Detail

getSvd

public SVDValueObject getSvd(Long eeId)

Get the SVD information for experiment with id given.

Specified by:

getSvd in interface SVDService

Returns:

value or null if there isn't one.

getSvdFactorAnalysis

public SVDValueObject getSvdFactorAnalysis(Long eeId)

Specified by:

getSvdFactorAnalysis in interface SVDService

getTopLoadedVectors

public Map<ProbeLoading,DoubleVectorValueObject> getTopLoadedVectors(Long eeId,
                                                                     int component,
                                                                     int count)

Specified by:

getTopLoadedVectors in interface SVDService

hasPca

public boolean hasPca(Long eeId)

Specified by:

hasPca in interface SVDService

svd

public SVDValueObject svd(Long eeId)

Specified by:

svd in interface SVDService