ubic.gemma.persistence.service.analysis.expression.coexpression

Class CoexpressionAnalysisDaoImpl

java.lang.Object

ubic.gemma.persistence.service.AbstractDao<T>

ubic.gemma.persistence.service.analysis.SingleExperimentAnalysisDaoBase<CoexpressionAnalysis>

ubic.gemma.persistence.service.analysis.expression.coexpression.CoexpressionAnalysisDaoImpl

All Implemented Interfaces:

AnalysisDao<CoexpressionAnalysis>, CoexpressionAnalysisDao, SingleExperimentAnalysisDao<CoexpressionAnalysis>, BaseDao<CoexpressionAnalysis>

@Repository
public class CoexpressionAnalysisDaoImpl
extends SingleExperimentAnalysisDaoBase<CoexpressionAnalysis>
implements CoexpressionAnalysisDao

Base Spring DAO Class: is able to create, update, remove, load, and find objects of type ubic.gemma.model.analysis.expression.coexpression.CoexpressionAnalysis.

See Also:

CoexpressionAnalysis

Field Summary

Fields inherited from class ubic.gemma.persistence.service.AbstractDao

DEFAULT_BATCH_SIZE, elementClass, log

Constructor Summary

Constructors

Constructor and Description
CoexpressionAnalysisDaoImpl(SessionFactory sessionFactory)

Method Summary

Modifier and Type	Method and Description
CoexpCorrelationDistribution	getCoexpCorrelationDistribution(ExpressionExperiment expressionExperiment)
Collection<Long>	getExperimentsWithAnalysis(Collection<Long> idsToFilter)
Boolean	hasCoexpCorrelationDistribution(ExpressionExperiment ee)

Methods inherited from class ubic.gemma.persistence.service.analysis.SingleExperimentAnalysisDaoBase

findByExperiment, findByExperiments, findByName, findByTaxon

Methods inherited from class ubic.gemma.persistence.service.AbstractDao

countAll, create, create, createInBatch, find, findByProperty, findByPropertyIn, findOneByProperty, findOrCreate, flush, getElementClass, getSessionFactory, load, load, loadAll, remove, remove, remove, removeAllInBatch, removeInBatch, save, save, saveInBatch, update, update, updateInBatch

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ubic.gemma.persistence.service.analysis.SingleExperimentAnalysisDao

findByExperiment, findByExperiments

Methods inherited from interface ubic.gemma.persistence.service.analysis.AnalysisDao

findByName, findByTaxon

Methods inherited from interface ubic.gemma.persistence.service.BaseDao

countAll, create, create, createInBatch, find, findOrCreate, getElementClass, load, load, loadAll, remove, remove, remove, removeAllInBatch, removeInBatch, save, save, saveInBatch, update, update, updateInBatch

Constructor Detail

CoexpressionAnalysisDaoImpl

@Autowired
public CoexpressionAnalysisDaoImpl(SessionFactory sessionFactory)

Method Detail

getCoexpCorrelationDistribution

public CoexpCorrelationDistribution getCoexpCorrelationDistribution(ExpressionExperiment expressionExperiment)

Specified by:

getCoexpCorrelationDistribution in interface CoexpressionAnalysisDao

getExperimentsWithAnalysis

public Collection<Long> getExperimentsWithAnalysis(Collection<Long> idsToFilter)

Specified by:

getExperimentsWithAnalysis in interface CoexpressionAnalysisDao

hasCoexpCorrelationDistribution

public Boolean hasCoexpCorrelationDistribution(ExpressionExperiment ee)

Specified by:

hasCoexpCorrelationDistribution in interface CoexpressionAnalysisDao