ubic.gemma.persistence.service.analysis

Interface SingleExperimentAnalysisDao<T extends SingleExperimentAnalysis>

All Superinterfaces:

AnalysisDao<T>, BaseDao<T>

All Known Subinterfaces:

CoexpressionAnalysisDao, DifferentialExpressionAnalysisDao

All Known Implementing Classes:

CoexpressionAnalysisDaoImpl, SingleExperimentAnalysisDaoBase

public interface SingleExperimentAnalysisDao<T extends SingleExperimentAnalysis>
extends AnalysisDao<T>

Author:

poirigui

Method Summary

Modifier and Type	Method and Description
Collection<T>	findByExperiment(BioAssaySet experiment) Find by associated experiment via SingleExperimentAnalysis.getExperimentAnalyzed().
Map<BioAssaySet,Collection<T>>	findByExperiments(Collection<? extends BioAssaySet> experiments) Given a collection of experiments returns a Map of Analysis --> collection of Experiments The collection of investigations returned by the map will include all the investigations for the analysis key iff one of the investigations for that analysis was in the given collection started with

Methods inherited from interface ubic.gemma.persistence.service.analysis.AnalysisDao

findByName, findByTaxon

Methods inherited from interface ubic.gemma.persistence.service.BaseDao

countAll, create, create, createInBatch, find, findOrCreate, getElementClass, load, load, loadAll, remove, remove, remove, removeAllInBatch, removeInBatch, save, save, saveInBatch, update, update, updateInBatch

Method Detail

findByExperiment

Collection<T> findByExperiment(BioAssaySet experiment)

Find by associated experiment via SingleExperimentAnalysis.getExperimentAnalyzed().

findByExperiments

Map<BioAssaySet,Collection<T>> findByExperiments(Collection<? extends BioAssaySet> experiments)

Given a collection of experiments returns a Map of Analysis --> collection of Experiments The collection of investigations returned by the map will include all the investigations for the analysis key iff one of the investigations for that analysis was in the given collection started with

Parameters:

experiments - experiments

Returns:

map to analyses