Package ubic.basecode.ontology.providers

@NullMarked package ubic.basecode.ontology.providers

This package contains baseCode built-in ontologies and a GenericOntologyService to implement your own ontologies.

Author:

klc, nicolas, paul, poirigui

Class	Description
AbstractBaseCodeOntologyService	Base class for all ontologies built-in to the baseCode project.
AbstractDelegatingOntologyService
CellLineOntologyService	Cell Line Ontology
CellTypeOntologyService	Cell Ontology
ChebiOntologyService	Chemical Entities of Biological Interest
DiseaseOntologyService	Deprecated. use MONDO instead
ExperimentalFactorOntologyService	Experimental Factor Ontology
FMAOntologyService	Deprecated. this ontology is inactive, use UBERON instead
GenericOntologyService	A way to create ad-hoc in-memory ontology services.
HumanDevelopmentOntologyService	Deprecated. this ontology was last updated in unmaintained since 2013
HumanPhenotypeOntologyService	Human Phenotype Ontology
MammalianPhenotypeOntologyService	Mammalian Phenotype Ontology
MedicOntologyService	Deprecated.
MouseDevelopmentOntologyService	Mouse Developmental Anatomy Ontology
NIFSTDOntologyService	Deprecated.
ObiService	Ontology for Biomedical Investigations
OntologyService
OntologyService.InferenceMode
OntologyService.LanguageLevel
SequenceOntologyService	Sequence types and features ontology
UberonOntologyService	Uberon multi-species anatomy ontology
UnitsOntologyService	Units of measurement ontology