Package ubic.basecode.ontology.providers

Class MedicOntologyService

java.lang.Object

ubic.basecode.ontology.providers.AbstractDelegatingOntologyService

ubic.basecode.ontology.providers.MedicOntologyService

All Implemented Interfaces:

AutoCloseable, OntologyService

@Deprecated
public class MedicOntologyService
extends AbstractDelegatingOntologyService

Deprecated.

MEDIC ONTOLOGY USED BY PHENOCARTA, its represents MESH terms as a tree so with can use the parent structure that a normal mesh term doesnt have

MEDIC comes from the CTD folks. See .... Unfortunately I do not know where our medic.owl file came from (PP)

Author:

Nicolas

Nested Class Summary

Nested classes/interfaces inherited from interface ubic.basecode.ontology.providers.OntologyService

OntologyService.InferenceMode, OntologyService.LanguageLevel

Constructor Summary

Constructors

Constructor	Description
MedicOntologyService()	Deprecated.

Method Summary

Methods inherited from class ubic.basecode.ontology.providers.AbstractDelegatingOntologyService

cancelInitializationThread, close, findIndividuals, findResources, findTerm, findUsingAlternativeId, getAdditionalPropertyUris, getAllURIs, getChildren, getDescription, getExcludedWordsFromStemming, getInferenceMode, getLanguageLevel, getName, getParents, getProcessImports, getResource, getTerm, getTermIndividuals, index, initialize, initialize, isEnabled, isInitializationThreadAlive, isInitializationThreadCancelled, isOntologyLoaded, isSearchEnabled, loadTermsInNameSpace, setAdditionalPropertyUris, setExcludedWordsFromStemming, setInferenceMode, setLanguageLevel, setProcessImports, setSearchEnabled, startInitializationThread, toString, waitForInitializationThread

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface ubic.basecode.ontology.providers.OntologyService

findIndividuals, findResources, findTerm, getChildren, getParents

Constructor Details

MedicOntologyService

public MedicOntologyService()

Deprecated.