Package ubic.basecode.datafilter

Class ItemLevelFilter<R,C>

java.lang.Object

ubic.basecode.datafilter.AbstractFilter<DoubleMatrix<R,C>,R,C,Double>

ubic.basecode.datafilter.AbstractLevelFilter<R,C>

ubic.basecode.datafilter.ItemLevelFilter<R,C>

All Implemented Interfaces:

Filter<DoubleMatrix<R,C>,R,C,Double>

public class ItemLevelFilter<R,C>
extends AbstractLevelFilter<R,C>

Filter that removes individual values that are outside of a range. Removed values are set to NaN.

Author:

Pavlidis

Field Summary

Fields inherited from class ubic.basecode.datafilter.AbstractLevelFilter

highCut, lowCut, useHighAsFraction, useLowAsFraction

Fields inherited from class ubic.basecode.datafilter.AbstractFilter

log

Constructor Summary

Constructors

Constructor	Description
ItemLevelFilter()

Method Summary

Modifier and Type	Method	Description
DoubleMatrix<R,C>	filter(DoubleMatrix<R,C> data)	Filter the data

Methods inherited from class ubic.basecode.datafilter.AbstractLevelFilter

setHighCut, setHighCut, setLowCut, setLowCut, setUseAsFraction, setUseHighCutAsFraction, setUseLowCutAsFraction

Methods inherited from class ubic.basecode.datafilter.AbstractFilter

getOutputMatrix

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

ItemLevelFilter

public ItemLevelFilter()

Method Details

filter

public DoubleMatrix<R,C> filter(DoubleMatrix<R,C> data)

Description copied from interface: Filter

Filter the data

Parameters:

data - a NamedMatrix. Some types of filters require that this be of a particular type of implementation of the Filter interface.

Returns:

The resulting filtered matrix