Uses of Class
ubic.basecode.math.linearmodels.DesignMatrix

Packages that use DesignMatrix

Package	Description
ubic.basecode.math.linearmodels

Uses of DesignMatrix in ubic.basecode.math.linearmodels

Constructors in ubic.basecode.math.linearmodels with parameters of type DesignMatrix

Constructor and Description
LeastSquaresFit(DesignMatrix designMatrix, DoubleMatrix<String,String> data) Preferred interface if you want control over how the design is set up.
LeastSquaresFit(DesignMatrix designMatrix, DoubleMatrix<String,String> data, cern.colt.matrix.DoubleMatrix2D weights) Weighted least squares fit between two matrices
LeastSquaresFit(DesignMatrix designMatrix, cern.colt.matrix.DoubleMatrix2D b, cern.colt.matrix.DoubleMatrix2D weights) Preferred interface for weighted least squares fit between two matrices
MeanVarianceEstimator(DesignMatrix designMatrix, DoubleMatrix<String,String> data, cern.colt.matrix.DoubleMatrix1D librarySize) Preferred interface if you want control over how the design is set up.
MeanVarianceEstimator(DesignMatrix designMatrix, cern.colt.matrix.DoubleMatrix2D data, cern.colt.matrix.DoubleMatrix1D librarySize) Executes voom() to calculate weights.