Hierarchy For All Packages

Package Hierarchies:

• ubic.basecode.datafilter,
• ubic.basecode.dataStructure,
• ubic.basecode.dataStructure.graph,
• ubic.basecode.dataStructure.matrix,
• ubic.basecode.dataStructure.params,
• ubic.basecode.dataStructure.tree,
• ubic.basecode.graphics,
• ubic.basecode.io,
• ubic.basecode.io.excel,
• ubic.basecode.io.reader,
• ubic.basecode.io.writer,
• ubic.basecode.math,
• ubic.basecode.math.distribution,
• ubic.basecode.math.linalg,
• ubic.basecode.math.linearmodels,
• ubic.basecode.math.metaanalysis,
• ubic.basecode.ontology,
• ubic.basecode.ontology.jena,
• ubic.basecode.ontology.ncbo,
• ubic.basecode.ontology.providers,
• ubic.basecode.util,
• ubic.basecode.util.r

Class Hierarchy

• java.lang.Object
  • ubic.basecode.dataStructure.matrix.AbstractDoubleMatrixTest
    • ubic.basecode.dataStructure.matrix.CompressedSparseDoubleMatrixTest
    • ubic.basecode.dataStructure.matrix.DenseDoubleMatrixTest
    • ubic.basecode.dataStructure.matrix.FastRowAccessDoubleMatrixTest
  • ubic.basecode.ontology.AbstractOntologyTest
    • ubic.basecode.ontology.providers.DiseaseOntologyServiceTest
    • ubic.basecode.ontology.providers.GenericOntologyServiceTest
    • ubic.basecode.ontology.providers.NIFSTDOntologyServiceTest
    • ubic.basecode.ontology.providers.ObiServiceTest
    • ubic.basecode.ontology.jena.OntologyLoaderTest
    • ubic.basecode.ontology.providers.OntologyProvidersTest
    • ubic.basecode.ontology.jena.OntologySearchTest
    • ubic.basecode.ontology.OntologyTermTest
    • ubic.basecode.ontology.providers.UberonOntologyServiceTest
  • ubic.basecode.util.r.AbstractRClientTest
    • ubic.basecode.util.r.JRIClientTest
    • ubic.basecode.util.r.RServeClientTest
  • ubic.basecode.datafilter.AbstractTestFilter
    • ubic.basecode.datafilter.TestItemLevelFilter
    • ubic.basecode.datafilter.TestRowAbsentFilter
    • ubic.basecode.datafilter.TestRowAffyNameFilter
    • ubic.basecode.datafilter.TestRowLevelFilter
    • ubic.basecode.datafilter.TestRowMissingFilter
    • ubic.basecode.datafilter.TestRowNameFilter
  • ubic.basecode.ontology.ncbo.AnnotatorClientTest
  • junit.framework.Assert
    • junit.framework.TestCase (implements junit.framework.Test)
      • ubic.basecode.util.DateUtilTest
  • ubic.basecode.util.BatchIteratorTest
  • ubic.basecode.dataStructure.tree.BinaryTreeTest
  • ubic.basecode.dataStructure.BitUtilTest
  • ubic.basecode.dataStructure.matrix.CompressedNamedBitMatrixTest
  • ubic.basecode.util.ConfigUtilsTest
  • ubic.basecode.math.CorrelationStatsTest
  • ubic.basecode.dataStructure.CountingMapTest
  • ubic.basecode.dataStructure.matrix.DenseDouble3dMatrixTest
  • ubic.basecode.math.linearmodels.DesignMatrixTest
  • ubic.basecode.math.DistanceTest
  • ubic.basecode.dataStructure.DoubleAddingMapTest
  • ubic.basecode.io.excel.ExcelUtilTest
  • ubic.basecode.util.FileToolsTest
  • ubic.basecode.io.reader.HistogramReaderTest
  • ubic.basecode.math.distribution.HistogramSamplerTest
  • ubic.basecode.math.distribution.HistogramTest
  • ubic.basecode.dataStructure.matrix.IntegerMatrixTest
  • ubic.basecode.ontology.jena.JenaUtilsTest
  • ubic.basecode.math.KruskalWallisTest
  • ubic.basecode.math.linearmodels.LeastSquaresFitTest
  • ubic.basecode.math.linearmodels.LeastSquaresFitTest2
  • ubic.basecode.graphics.MatrixDisplayTest
  • ubic.basecode.dataStructure.matrix.MatrixUtilTest
  • ubic.basecode.io.writer.MatrixWriterTest
  • ubic.basecode.math.linearmodels.MeanVarianceEstimatorTest
  • ubic.basecode.ontology.providers.MedicOntologyServiceTest
  • ubic.basecode.math.metaanalysis.MetaAnalysisTest
  • ubic.basecode.math.linearmodels.ModeratedTstatTest
  • ubic.basecode.math.MultipleTestCorrectionTest
  • ubic.basecode.util.NetUtilsTest
  • ubic.basecode.math.distribution.NormalProbabilityComputerTest
  • ubic.basecode.dataStructure.params.ParameterKeeperTest
  • ubic.basecode.dataStructure.params.ParamGrabberTest
  • ubic.basecode.math.PrecisionRecallTest
  • ubic.basecode.util.PrettyPrinterTest
  • ubic.basecode.util.PrettyPrinterTest.OntologyTermSimple
  • ubic.basecode.math.linalg.QRDecompositionTest
  • ubic.basecode.math.RandomChooserTest
  • ubic.basecode.dataStructure.matrix.RCDoubleMatrix1DTest
  • ubic.basecode.dataStructure.matrix.RCDoubleMatrix1DTest2
  • ubic.basecode.math.SingularValueDecompositionTest
  • ubic.basecode.dataStructure.matrix.SparseDoubleMatrixTest
  • ubic.basecode.dataStructure.matrix.SparseRaggedDoubleMatrixTest
  • ubic.basecode.util.SQLUtilsTest
  • ubic.basecode.math.StringDistanceTest
  • ubic.basecode.dataStructure.matrix.StringMatrixTest
  • ubic.basecode.dataStructure.StringToStringSetMapTest
  • ubic.basecode.util.StringUtilTest
  • ubic.basecode.io.TestByteArrayConverter
  • ubic.basecode.math.metaanalysis.TestCorrelationEffectMetaAnalysis
  • ubic.basecode.math.TestDescriptiveWithMissing
  • ubic.basecode.dataStructure.graph.TestDirectedGraph
  • ubic.basecode.io.reader.TestDoubleMatrixReader
  • ubic.basecode.io.writer.TestHistogramWriter
  • ubic.basecode.math.TestKSTest
  • ubic.basecode.io.reader.TestMapReader
  • ubic.basecode.math.TestMathUtil
  • ubic.basecode.math.TestMatrixNormalizer
  • ubic.basecode.math.TestMatrixRowStats
  • ubic.basecode.math.TestMatrixStats
  • ubic.basecode.math.metaanalysis.TestMeanDifferenceMetaAnalysis
  • ubic.basecode.math.TestRank
  • ubic.basecode.math.TestROC
  • ubic.basecode.io.reader.TestSparseDoubleMatrixReader
  • ubic.basecode.io.reader.TestSparseRaggedDouble2DNamedMatrixReader
  • ubic.basecode.math.TestSpecFunc
  • ubic.basecode.math.TestStats
  • ubic.basecode.io.TestStringConverter
  • ubic.basecode.io.reader.TestStringMatrixReader
  • ubic.basecode.util.TestStringUtil
  • ubic.basecode.math.TestWilcoxon
  • ubic.basecode.math.distribution.TestWishart
  • ubic.basecode.ontology.jena.UberonOntologySearchTest
  • ubic.basecode.math.distribution.UniformDensityComputerTest