Uses of Interface
ubic.basecode.ontology.providers.OntologyService

Packages that use OntologyService

Package	Description
ubic.basecode.ontology.jena
ubic.basecode.ontology.providers

Uses of OntologyService in ubic.basecode.ontology.jena

Classes in ubic.basecode.ontology.jena that implement OntologyService

Modifier and Type	Class	Description
class	AbstractOntologyMemoryBackedService	This class has some stuff that's specific to in-memory ontologies.
class	AbstractOntologyService	Base class for Jena-based ontology services.

Uses of OntologyService in ubic.basecode.ontology.providers

Classes in ubic.basecode.ontology.providers that implement OntologyService

Modifier and Type	Class	Description
class	CellLineOntologyService	See http://www.obofoundry.org/cgi-bin/detail.cgi?id=CLO
class	CellTypeOntologyService	See http://www.obofoundry.org/cgi-bin/detail.cgi?id=cell
class	ChebiOntologyService	Loads the CHEBI Ontology at startup in its own thread.
class	DiseaseOntologyService	Holds a copy of the Disease Ontology.
class	ExperimentalFactorOntologyService
class	FMAOntologyService	Holds a copy of the FMA Ontology on disk.
class	GenericOntologyService	A way to create ad hoc ontology services (in memory) for testing
class	HumanDevelopmentOntologyService
class	HumanPhenotypeOntologyService	See http://bioportal.bioontology.org/ontologies/45774?p=terms&conceptid=HP%3A0001264 for example.
class	MammalianPhenotypeOntologyService
class	MedicOntologyService	MEDIC ONTOLOGY USED BY PHENOCARTA, its represents MESH terms as a tree so with can use the parent structure that a normal mesh term doesnt have
class	MouseDevelopmentOntologyService
class	NIFSTDOntologyService
class	ObiService
class	SequenceOntologyService	Support for the Sequence Ontology
class	UberonOntologyService	Uberon
class	UnitsOntologyService	Support for the units ontology