Package ubic.basecode.ontology.providers

Class DiseaseOntologyService

java.lang.Object

ubic.basecode.ontology.jena.AbstractOntologyService

ubic.basecode.ontology.jena.AbstractOntologyMemoryBackedService

ubic.basecode.ontology.providers.DiseaseOntologyService

All Implemented Interfaces:

OntologyService

public class DiseaseOntologyService
extends AbstractOntologyMemoryBackedService

Holds a copy of the Disease Ontology.

Author:

klc

Nested Class Summary

Nested classes/interfaces inherited from interface ubic.basecode.ontology.providers.OntologyService

OntologyService.InferenceMode, OntologyService.LanguageLevel

Field Summary

Fields inherited from class ubic.basecode.ontology.jena.AbstractOntologyService

log

Constructor Summary

Constructors

Constructor	Description
DiseaseOntologyService()

Method Summary

Modifier and Type	Method	Description
protected String	getOntologyName()	The simple getOntologyName() of the ontology.
protected String	getOntologyUrl()	Defines the location of the ontology eg: MGED

Methods inherited from class ubic.basecode.ontology.jena.AbstractOntologyMemoryBackedService

loadModel, loadModelFromStream

Methods inherited from class ubic.basecode.ontology.jena.AbstractOntologyService

cancelInitializationThread, closeIndex, findIndividuals, findResources, findTerm, findUsingAlternativeId, getAdditionalPropertyUris, getAllURIs, getCacheName, getChildren, getInferenceMode, getLanguageLevel, getParents, getProcessImports, getResource, getTerm, getTermIndividuals, index, initialize, initialize, isEnabled, isInitializationThreadAlive, isInitializationThreadCancelled, isOntologyLoaded, isSearchEnabled, loadTermsInNameSpace, setAdditionalPropertyUris, setInferenceMode, setLanguageLevel, setProcessImports, setSearchEnabled, startInitializationThread, toString, waitForInitializationThread

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface ubic.basecode.ontology.providers.OntologyService

findIndividuals, findResources, findTerm, getChildren, getParents

Constructor Detail

DiseaseOntologyService

public DiseaseOntologyService()

Method Detail

getOntologyName

protected String getOntologyName()

Description copied from class: AbstractOntologyService

The simple getOntologyName() of the ontology. Used for indexing purposes. (ie this will determine the getOntologyName() of the underlying index for searching the ontology)

Specified by:

getOntologyName in class AbstractOntologyService

getOntologyUrl

protected String getOntologyUrl()

Description copied from class: AbstractOntologyService

Defines the location of the ontology eg: MGED

Overrides:

getOntologyUrl in class AbstractOntologyMemoryBackedService