Uses of Interface
ubic.basecode.dataStructure.matrix.ObjectMatrix

Packages that use ObjectMatrix

Package	Description
ubic.basecode.dataStructure.matrix
ubic.basecode.math.linearmodels
ubic.basecode.util.r

Uses of ObjectMatrix in ubic.basecode.dataStructure.matrix

Classes in ubic.basecode.dataStructure.matrix that implement ObjectMatrix

Modifier and Type	Class and Description
class	CompressedBitMatrix<R,C> Named compressed sparse bit matrix.
class	ObjectMatrixImpl<R,C,V> Matrix that can hold any type of object
class	StringMatrix<R,C> A NamedMatrix containing String objects.

Methods in ubic.basecode.dataStructure.matrix that return ObjectMatrix

Modifier and Type	Method and Description
ObjectMatrix<R,C,String>	StringMatrix.subset(int startRow, int startCol, int numRow, int numCol)
ObjectMatrix<R,C,V>	ObjectMatrixImpl.subset(int startRow, int startCol, int numRow, int numCol)
ObjectMatrix<R,C,V>	ObjectMatrix.subset(int startRow, int startCol, int numRow, int numCol)
ObjectMatrix<R,C,double[]>	CompressedBitMatrix.subset(int startRow, int startCol, int numRow, int numCol)
ObjectMatrix<R,C,String>	StringMatrix.subsetColumns(List<C> columns)
ObjectMatrix<R,C,V>	ObjectMatrix.subsetColumns(List<C> columns)
ObjectMatrix<R,C,double[]>	CompressedBitMatrix.subsetColumns(List<C> columns)

Uses of ObjectMatrix in ubic.basecode.math.linearmodels

Methods in ubic.basecode.math.linearmodels with parameters of type ObjectMatrix

Modifier and Type	Method and Description
void	DesignMatrix.add(ObjectMatrix<String,String,Object> sampleInfo) Append additional factors/covariates to this

Constructors in ubic.basecode.math.linearmodels with parameters of type ObjectMatrix

Constructor and Description
DesignMatrix(ObjectMatrix<String,String,?> sampleInfo, boolean intercept)
DesignMatrix(ObjectMatrix<String,String,? extends Object> sampleInfo)
DesignMatrix(ObjectMatrix<String,String,Object> design, boolean intercept, boolean strict)
LeastSquaresFit(ObjectMatrix<String,String,Object> sampleInfo, cern.colt.matrix.impl.DenseDoubleMatrix2D data)
LeastSquaresFit(ObjectMatrix<String,String,Object> sampleInfo, cern.colt.matrix.impl.DenseDoubleMatrix2D data, boolean interactions)
LeastSquaresFit(ObjectMatrix<String,String,Object> design, DoubleMatrix<String,String> b) NamedMatrix allows easier handling of the results.
LeastSquaresFit(ObjectMatrix<String,String,Object> design, DoubleMatrix<String,String> data, boolean interactions) NamedMatrix allows easier handling of the results.

Uses of ObjectMatrix in ubic.basecode.util.r

Methods in ubic.basecode.util.r that return ObjectMatrix

Modifier and Type	Method and Description
ObjectMatrix<String,String,Object>	RClient.dataFrameEval(String command) Evaluate a command that returns a dataFrame
ObjectMatrix<String,String,Object>	AbstractRClient.dataFrameEval(String command)

Methods in ubic.basecode.util.r with parameters of type ObjectMatrix

Modifier and Type	Method and Description
String	RClient.dataFrame(ObjectMatrix<String,String,Object> matrix) Convert an object matrix into an R data frame.
String	AbstractRClient.dataFrame(ObjectMatrix<String,String,Object> matrix)
LinearModelSummary	RClient.linearModel(double[] data, ObjectMatrix<String,String,Object> design)
LinearModelSummary	AbstractRClient.linearModel(double[] data, ObjectMatrix<String,String,Object> d)