Mouse Brain data: More complex patterns

General notes applying to all analysis:

• Results images are filtered to remove genes with mostly negative expression values.
• Images show data that has been adjusted to mean zero, variance one, and clipped to increase contrast. More on reading images here.
• The image column headings refer to "subA"; this is an artifact of how we set this up, and both subA and subB arrays were used for the analysis.
• Clicking on an image will show you the detailed results for that gene.
• There are also HTML versions of the data. At this point the genes which have mostly negative values are still in those tables. A warning will be shown when you encounter one which would be filtered.
• You can access Sandberg's raw data file lines corresponding to a probe or accession number by entering it in the form; similarly you can get this from the HTML table versions of the data.
• In each figure, genes with p values <0.001 are shown. The leftmost column shows a black tick if Sandberg listed the gene; the second column is the average expression level of the gene (clipped at 1000). The rest of the columns show the data, adjusted to a mean of zero and variance of one, and clipped to the range -1 to 1 (this increases the contrast). The genes are listed in order of increasing p value.
• Annotations are not necessarily complete as given here.