Interface ExpressionAnalysisResultSetService
- All Superinterfaces:
AnalysisResultSetService<DifferentialExpressionAnalysisResult, ExpressionAnalysisResultSet>, BaseReadOnlyService<ExpressionAnalysisResultSet>, BaseVoEnabledService<ExpressionAnalysisResultSet, DifferentialExpressionAnalysisResultSetValueObject>, FilteringService<ExpressionAnalysisResultSet>, FilteringVoEnabledService<ExpressionAnalysisResultSet, DifferentialExpressionAnalysisResultSetValueObject>
- All Known Implementing Classes:
ExpressionAnalysisResultSetServiceImpl
public interface ExpressionAnalysisResultSetService
extends AnalysisResultSetService<DifferentialExpressionAnalysisResult, ExpressionAnalysisResultSet>, FilteringVoEnabledService<ExpressionAnalysisResultSet, DifferentialExpressionAnalysisResultSetValueObject>
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Method Summary
Modifier and TypeMethodDescriptionlonglongcountResults(ExpressionAnalysisResultSet ears, double threshold) findByBioAssaySetInAndDatabaseEntryInLimit(Collection<BioAssaySet> bioAssaySets, Collection<DatabaseEntry> externalIds, Filters filters, int offset, int limit, Sort sort) getBaselinesForInteractions(Set<ExpressionAnalysisResultSet> resultSets, boolean initializeFactorValues) getBaselinesForInteractionsByIds(Collection<Long> rsIds, boolean initializeFactorValues) loadValueObjectWithResults(ExpressionAnalysisResultSet ears, boolean includeFactorValuesInContrasts, boolean queryByResult, boolean includeTaxonInGenes) loadWithAnalysis(Long id) loadWithResultsAndContrasts(Long value) loadWithResultsAndContrasts(Long value, double threshold, int offset, int limit) loadWithResultsAndContrasts(Long value, int offset, int limit) Methods inherited from interface BaseReadOnlyService
countAll, find, findOrFail, getElementClass, load, load, loadAll, loadOrFail, loadOrFail, loadOrFail, loadOrFail, streamAll, streamAllMethods inherited from interface BaseVoEnabledService
loadAllValueObjects, loadValueObject, loadValueObjectById, loadValueObjects, loadValueObjectsByIdsMethods inherited from interface FilteringService
count, getFilter, getFilter, getFilter, getFilter, getFilter, getFilter, getFilterableProperties, getFilterablePropertyAllowedValues, getFilterablePropertyConfigAttributes, getFilterablePropertyDescription, getFilterablePropertyIsUsingSubquery, getFilterablePropertyResolvableAllowedValuesLabels, getFilterablePropertyType, getIdentifierPropertyName, getSort, load, load, loadIdsMethods inherited from interface FilteringVoEnabledService
loadValueObjects, loadValueObjects
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Method Details
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loadWithAnalysis
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loadWithResultsAndContrasts
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loadWithResultsAndContrasts
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loadWithResultsAndContrasts
ExpressionAnalysisResultSet loadWithResultsAndContrasts(Long value, double threshold, int offset, int limit) -
countResults
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countResults
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thaw
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loadWithExperimentAnalyzed
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loadValueObjectWithResults
DifferentialExpressionAnalysisResultSetValueObject loadValueObjectWithResults(ExpressionAnalysisResultSet ears, boolean includeFactorValuesInContrasts, boolean queryByResult, boolean includeTaxonInGenes) -
loadResultIdToGenesMap
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findByBioAssaySetInAndDatabaseEntryInLimit
Slice<DifferentialExpressionAnalysisResultSetValueObject> findByBioAssaySetInAndDatabaseEntryInLimit(@Nullable Collection<BioAssaySet> bioAssaySets, @Nullable Collection<DatabaseEntry> externalIds, @Nullable Filters filters, int offset, int limit, @Nullable Sort sort) -
getBaseline
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getBaselinesForInteractions
Map<ExpressionAnalysisResultSet, Baseline> getBaselinesForInteractions(Set<ExpressionAnalysisResultSet> resultSets, boolean initializeFactorValues) -
getBaselinesForInteractionsByIds
Map<Long,Baseline> getBaselinesForInteractionsByIds(Collection<Long> rsIds, boolean initializeFactorValues) -
loadPvalueDistribution
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