Class PreprocessTaskCommand

java.lang.Object

ubic.gemma.core.job.TaskCommand

ubic.gemma.core.tasks.analysis.expression.PreprocessTaskCommand

All Implemented Interfaces:

Serializable

public class PreprocessTaskCommand
extends TaskCommand

Command object for processing data vectors. Has dual purpose for updating the correlation matrices.

Author:

keshav

See Also:

• Serialized Form

Field Summary

Fields inherited from class TaskCommand

MAX_QUEUING_MILLIS, MAX_RUNTIME_MILLIS

Constructor Summary

Constructors

Constructor	Description
PreprocessTaskCommand(ExpressionExperiment ee)

Method Summary

Modifier and Type	Method	Description
boolean	diagnosticsOnly()
ExpressionExperiment	getExpressionExperiment()
Class<? extends Task<? extends TaskCommand>>	getTaskClass()	Obtain the class of the Task object that will be run for this command.
void	setDiagnosticsOnly(boolean diagnosticsOnly)	If true, we'll try to just update the diagnostics (M-V, PCA and sample correlation)
void	setExpressionExperiment(ExpressionExperiment expressionExperiment)

Methods inherited from class Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

PreprocessTaskCommand

public PreprocessTaskCommand(ExpressionExperiment ee)

Method Details

getExpressionExperiment

public ExpressionExperiment getExpressionExperiment()

setExpressionExperiment

public void setExpressionExperiment(ExpressionExperiment expressionExperiment)

getTaskClass

public Class<? extends Task<? extends TaskCommand>> getTaskClass()

Description copied from class: TaskCommand

Obtain the class of the Task object that will be run for this command.

If null, the task command cannot be submitted through TaskRunningService.submitTaskCommand(TaskCommand) and a task object must be explicitly created.

For now, this how we map from TaskCommand to Task that actually runs it. We have to have this mapping somewhere until we make Tasks themselves serializable. Tasks are not readily serializable because they have dependencies to Spring services. at which point TaskCommand can be deprecated(or remain as TaskContext).

Overrides:

getTaskClass in class TaskCommand

diagnosticsOnly

public boolean diagnosticsOnly()

setDiagnosticsOnly

public void setDiagnosticsOnly(boolean diagnosticsOnly)

If true, we'll try to just update the diagnostics (M-V, PCA and sample correlation)

Parameters:

diagnosticsOnly - whether to only update the diagnostics