Class GeneOntologySearchSource
java.lang.Object
ubic.gemma.core.search.source.GeneOntologySearchSource
- All Implemented Interfaces:
SearchSource
GO-based search source.
This does not exactly fit the OntologySearchSource because it is specialized for the GeneOntologyService
and uses higher-level method to retrieve GO-gene associations.
- Author:
- poirigui
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionbooleanaccepts(SearchSettings settings) Indicate if this source accepts the given search settings.searchGene(SearchSettings settings, SearchContext context)
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Constructor Details
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GeneOntologySearchSource
public GeneOntologySearchSource()
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Method Details
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accepts
Description copied from interface:SearchSourceIndicate if this source accepts the given search settings.- Specified by:
acceptsin interfaceSearchSource
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searchGene
public Collection<SearchResult<Gene>> searchGene(SearchSettings settings, SearchContext context) throws SearchException - Specified by:
searchGenein interfaceSearchSource- Throws:
SearchException
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