Interface SimpleExpressionDataLoaderService
- All Known Implementing Classes:
SimpleExpressionDataLoaderServiceImpl
public interface SimpleExpressionDataLoaderService
Load experiment from a flat file. See also
DataUpdater for related
operations on experiments already in the system.- Author:
- paul
-
Method Summary
Modifier and TypeMethodDescriptionconvert(SimpleExpressionExperimentMetadata metaData, DoubleMatrix<String, String> data) Convert simple experiment metadata and data into Gemma objects.create(SimpleExpressionExperimentMetadata metaData, DoubleMatrix<String, String> data) Parses, converts (into Gemma objects), and loads data into the database.
-
Method Details
-
create
ExpressionExperiment create(SimpleExpressionExperimentMetadata metaData, @Nullable DoubleMatrix<String, String> data) Parses, converts (into Gemma objects), and loads data into the database.If data is provided and preferred, post-processing will be triggered.
- Parameters:
metaData- meta datadata- tab-delimited file with row names corresponding toCompositeSequencenames and column names corresponding toBioAssaynames. Note that if you provide samples in the metadata, all the samples referenced in the data file must be declared.- Returns:
- new experiment
-
convert
ExpressionExperiment convert(SimpleExpressionExperimentMetadata metaData, @Nullable DoubleMatrix<String, String> data) Convert simple experiment metadata and data into Gemma objects.
-