Interface BulkExpressionDataPrimitiveIntMatrix

All Superinterfaces:

BulkExpressionDataMatrix<Integer>, ExpressionDataMatrix<Integer>, ExpressionDataPrimitiveIntMatrix

All Known Implementing Classes:

BulkExpressionDataIntMatrix

public interface BulkExpressionDataPrimitiveIntMatrix
extends BulkExpressionDataMatrix<Integer>, ExpressionDataPrimitiveIntMatrix

Interface for bulk expression data matrices that can be efficiently accessed as a primitive int matrix.

Author:

poirigui

Method Summary

Modifier and Type	Method	Description
int[]	getColumnAsInts(BioAssay bioAssay)	Retrieve the given column without boxing.
int[][]	getRawMatrixAsInts()	Obtain the raw matrix as a int array.

Methods inherited from interface BulkExpressionDataMatrix

get, getBioAssayDimension, getBioAssayForColumn, getBioMaterialForColumn, getColumn, getColumnIndex, getColumnIndex, getRawMatrix, hasMissingValues

Methods inherited from interface ExpressionDataMatrix

columns, get, getColumn, getDesignElementForRow, getDesignElements, getExpressionExperiment, getQuantitationType, getRow, getRow, getRowElement, getRowElements, getRowIndex, getRowIndices, rows

Methods inherited from interface ExpressionDataPrimitiveIntMatrix

getAsInt, getColumnAsInts, getRowAsInts, getRowAsInts

Method Details

getColumnAsInts

@Nullable
int[] getColumnAsInts(BioAssay bioAssay)

Retrieve the given column without boxing.

See Also:

• ExpressionDataMatrix.getColumn(int)

getRawMatrixAsInts

int[][] getRawMatrixAsInts()

Obtain the raw matrix as a int array.

See Also:

• BulkExpressionDataMatrix.getRawMatrix()