Package ubic.gemma.persistence.service.genome.sequenceAnalysis

Class BlatResultServiceImpl

java.lang.Object

ubic.gemma.persistence.service.AbstractService<BlatResult>

ubic.gemma.persistence.service.AbstractVoEnabledService<BlatResult,BlatResultValueObject>

ubic.gemma.persistence.service.genome.sequenceAnalysis.BlatResultServiceImpl

All Implemented Interfaces:

BaseImmutableService<BlatResult>, BaseReadOnlyService<BlatResult>, BaseService<BlatResult>, BaseVoEnabledService<BlatResult,BlatResultValueObject>, BlatResultService

@Component
public class BlatResultServiceImpl
extends AbstractVoEnabledService<BlatResult,BlatResultValueObject>
implements BlatResultService

Spring Service base class for BlatResultService, provides access to all services and entities referenced by this service.

See Also:

• BlatResultService

Field Summary

Fields inherited from class ubic.gemma.persistence.service.AbstractService

log

Constructor Summary

Constructors

Constructor	Description
BlatResultServiceImpl(BlatResultDao blatResultDao)

Method Summary

Modifier and Type	Method	Description
Collection<BlatResult>	findByBioSequence(BioSequence bioSequence)
Collection<BlatResult>	thaw(Collection<BlatResult> blatResults)
BlatResult	thaw(BlatResult blatResult)

Methods inherited from class ubic.gemma.persistence.service.AbstractVoEnabledService

loadAllValueObjects, loadValueObject, loadValueObjectById, loadValueObjects, loadValueObjectsByIds

Methods inherited from class ubic.gemma.persistence.service.AbstractService

countAll, create, create, ensureInSession, ensureInSession, find, findOrCreate, findOrFail, getElementClass, load, load, loadAll, loadOrFail, loadOrFail, loadOrFail, loadOrFail, loadOrFail, loadOrFail, remove, remove, remove, save, save, streamAll, streamAll, update, update

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ubic.gemma.persistence.service.BaseImmutableService

create, create, findOrCreate, remove, remove

Methods inherited from interface ubic.gemma.persistence.service.BaseReadOnlyService

countAll, find, findOrFail, getElementClass, load, load, loadAll, loadOrFail, loadOrFail, loadOrFail, loadOrFail, loadOrFail, loadOrFail, streamAll, streamAll

Methods inherited from interface ubic.gemma.persistence.service.BaseService

save, save, update

Methods inherited from interface ubic.gemma.persistence.service.BaseVoEnabledService

loadAllValueObjects, loadValueObject, loadValueObjectById, loadValueObjects, loadValueObjectsByIds

Methods inherited from interface ubic.gemma.persistence.service.genome.sequenceAnalysis.BlatResultService

remove, update

Constructor Details

BlatResultServiceImpl

@Autowired
public BlatResultServiceImpl(BlatResultDao blatResultDao)

Method Details

findByBioSequence

@Transactional(readOnly=true)
public Collection<BlatResult> findByBioSequence(BioSequence bioSequence)

Specified by:

findByBioSequence in interface BlatResultService

See Also:

• BlatResultService.findByBioSequence(ubic.gemma.model.genome.biosequence.BioSequence)

thaw

@Transactional(readOnly=true)
public BlatResult thaw(BlatResult blatResult)

Specified by:

thaw in interface BlatResultService

thaw

@Transactional(readOnly=true)
public Collection<BlatResult> thaw(Collection<BlatResult> blatResults)

Specified by:

thaw in interface BlatResultService