Package ubic.gemma.persistence.service.genome.sequenceAnalysis

Interface BlatResultDao

All Superinterfaces:

BaseDao<BlatResult>, BaseVoEnabledDao<BlatResult,BlatResultValueObject>

All Known Implementing Classes:

BlatResultDaoImpl

public interface BlatResultDao
extends BaseVoEnabledDao<BlatResult,BlatResultValueObject>

Author:

Gemma

See Also:

• BlatResult

Method Summary

Modifier and Type	Method	Description
Collection<BlatResult>	findByBioSequence(BioSequence bioSequence)	Find BLAT results for the given sequence
Collection<BlatResult>	thaw(Collection<BlatResult> blatResults)
BlatResult	thaw(BlatResult blatResult)

Methods inherited from interface ubic.gemma.persistence.service.BaseDao

countAll, create, create, find, findOrCreate, getElementClass, load, load, loadAll, loadReference, loadReference, reload, reload, remove, remove, remove, save, save, streamAll, streamAll, update, update

Methods inherited from interface ubic.gemma.persistence.service.BaseVoEnabledDao

loadAllValueObjects, loadValueObject, loadValueObjectById, loadValueObjects, loadValueObjectsByIds

Method Details

thaw

BlatResult thaw(BlatResult blatResult)

thaw

Collection<BlatResult> thaw(Collection<BlatResult> blatResults)

findByBioSequence

Collection<BlatResult> findByBioSequence(BioSequence bioSequence)

Find BLAT results for the given sequence

Parameters:

bioSequence - BA

Returns:

matching blat results