java.lang.Object
- org.springframework.beans.factory.config.AbstractFactoryBean<T>
- - ubic.gemma.core.ontology.providers.OntologyServiceFactory<T>

Type Parameters:

T - the type of ontology service this factory produces

All Implemented Interfaces:

org.springframework.beans.factory.Aware, org.springframework.beans.factory.BeanClassLoaderAware, org.springframework.beans.factory.BeanFactoryAware, org.springframework.beans.factory.DisposableBean, org.springframework.beans.factory.FactoryBean<T>, org.springframework.beans.factory.InitializingBean
```
public class OntologyServiceFactory<T extends OntologyService>
extends org.springframework.beans.factory.config.AbstractFactoryBean<T>
```
Factory bean for baseCode's OntologyService.

Field Summary
- Fields inherited from class org.springframework.beans.factory.config.AbstractFactoryBean
  logger

Constructor Summary

Constructors
Constructor	Description
`OntologyServiceFactory(Class<T> ontologyServiceClass)`	Create a factory for an ontology service class.
`OntologyServiceFactory(T ontologyService)`	Create a factory for a pre-existing ontology service.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`protected T`	`createInstance()`
`protected void`	`destroyInstance(T instance)`
`Class<?>`	`getObjectType()`
`boolean`	`isSingleton()`
`void`	`setAdditionalPropertyUris(Set<String> additionalPropertyUris)`	Set the URIs used for inferring additional properties.
`void`	`setAutoLoad(boolean autoLoad)`	Enable loading of ontologies on startup.
`void`	`setEnableSearch(boolean enableSearch)`	Enable full-text search for the ontology.
`void`	`setExcludedWordsFromStemming(Set<String> excludedWordsFromStemming)`	Set the list of words that should be excluded from stemming.
`void`	`setForceIndexing(boolean forceIndexing)`	Force indexing for full-text search.
`void`	`setForceLoad(boolean forceLoad)`	Force loading, regardless of the `load.{name}Ontology` property value.
`void`	`setInferenceMode(OntologyService.InferenceMode inferenceMode)`	Set the inference mode for the ontology.
`void`	`setLanguageLevel(OntologyService.LanguageLevel languageLevel)`	Set the supported OWL language level for the ontology.
`void`	`setLoadInBackground(boolean loadInBackground)`	Initialize the service using a background thread.
`void`	`setProcessImports(boolean processImports)`	Enable import processing for the ontology.
`void`	`setTaskExecutor(org.springframework.core.task.TaskExecutor taskExecutor)`	Set the task executor used for initializing ontology service in background.

Methods inherited from class org.springframework.beans.factory.config.AbstractFactoryBean
afterPropertiesSet, destroy, getBeanFactory, getBeanTypeConverter, getEarlySingletonInterfaces, getObject, setBeanClassLoader, setBeanFactory, setSingleton

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - OntologyServiceFactory
```
public OntologyServiceFactory(Class<T> ontologyServiceClass)
```
    Create a factory for an ontology service class.
    The class must have a no-arg constructor.
  - OntologyServiceFactory
```
public OntologyServiceFactory(T ontologyService)
```
    Create a factory for a pre-existing ontology service.
- Method Detail
  - setAutoLoad
```
public void setAutoLoad(boolean autoLoad)
```
    Enable loading of ontologies on startup.
  - setForceLoad
```
public void setForceLoad(boolean forceLoad)
```
    Force loading, regardless of the load.{name}Ontology property value.
  - setForceIndexing
```
public void setForceIndexing(boolean forceIndexing)
```
    Force indexing for full-text search.
  - setLoadInBackground
```
public void setLoadInBackground(boolean loadInBackground)
```
    Initialize the service using a background thread.
    If an executor is supplied via setTaskExecutor(TaskExecutor), it will be used for initializing the ontology, otherwise one thread per ontology will be created via OntologyService.startInitializationThread(boolean, boolean).
    If false, the ontology will be initialized in the foreground. This will dramatically impact the startup time of Gemma.
    
    See Also:
    
    OntologyService.startInitializationThread(boolean, boolean), OntologyService.initialize(boolean, boolean)
  - setTaskExecutor
```
public void setTaskExecutor(org.springframework.core.task.TaskExecutor taskExecutor)
```
    Set the task executor used for initializing ontology service in background.
  - setLanguageLevel
```
public void setLanguageLevel(OntologyService.LanguageLevel languageLevel)
```
    Set the supported OWL language level for the ontology.
    
    See Also:
    
    OntologyService.setLanguageLevel(OntologyService.LanguageLevel)
  - setInferenceMode
```
public void setInferenceMode(OntologyService.InferenceMode inferenceMode)
```
    Set the inference mode for the ontology.
    
    See Also:
    
    OntologyService.setInferenceMode(OntologyService.InferenceMode)
  - setEnableSearch
```
public void setEnableSearch(boolean enableSearch)
```
    Enable full-text search for the ontology.
    
    See Also:
    
    OntologyService.setSearchEnabled(boolean)
  - setExcludedWordsFromStemming
```
public void setExcludedWordsFromStemming(@Nullable
                                         Set<String> excludedWordsFromStemming)
```
    Set the list of words that should be excluded from stemming.
    
    See Also:
    
    OntologyService.setExcludedWordsFromStemming(Set)
  - setProcessImports
```
public void setProcessImports(boolean processImports)
```
    Enable import processing for the ontology.
    
    See Also:
    
    OntologyService.setProcessImports(boolean)
  - setAdditionalPropertyUris
```
public void setAdditionalPropertyUris(@Nullable
                                      Set<String> additionalPropertyUris)
```
    Set the URIs used for inferring additional properties.
    If null, baseCode's defaults will be used. You may use an empty set to disable additional properties inference.
    
    See Also:
    
    OntologyService.setAdditionalPropertyUris(Set)
  - getObjectType
```
public Class<?> getObjectType()
```
    Specified by:
    
    getObjectType in interface org.springframework.beans.factory.FactoryBean<T extends OntologyService>
    
    Specified by:
    
    getObjectType in class org.springframework.beans.factory.config.AbstractFactoryBean<T extends OntologyService>
  - isSingleton
```
public boolean isSingleton()
```
    Specified by:
    
    isSingleton in interface org.springframework.beans.factory.FactoryBean<T extends OntologyService>
    
    Overrides:
    
    isSingleton in class org.springframework.beans.factory.config.AbstractFactoryBean<T extends OntologyService>
  - createInstance
```
protected T createInstance()
                    throws Exception
```
    Specified by:
    
    createInstance in class org.springframework.beans.factory.config.AbstractFactoryBean<T extends OntologyService>
    
    Throws:
    
    Exception
  - destroyInstance
```
protected void destroyInstance(T instance)
                        throws Exception
```
    Overrides:
    
    destroyInstance in class org.springframework.beans.factory.config.AbstractFactoryBean<T extends OntologyService>
    
    Throws:
    
    Exception

Class OntologyServiceFactory<T extends OntologyService>

Field Summary

Fields inherited from class org.springframework.beans.factory.config.AbstractFactoryBean

Constructor Summary

Method Summary

Methods inherited from class org.springframework.beans.factory.config.AbstractFactoryBean

Methods inherited from class java.lang.Object

Constructor Detail

OntologyServiceFactory

OntologyServiceFactory

Method Detail

setAutoLoad

setForceLoad

setForceIndexing

setLoadInBackground

setTaskExecutor

setLanguageLevel

setInferenceMode

setEnableSearch

setExcludedWordsFromStemming

setProcessImports

setAdditionalPropertyUris

getObjectType

isSingleton

createInstance

destroyInstance