Package ubic.gemma.core.goldenpath

Class GoldenPath

java.lang.Object

ubic.gemma.core.goldenpath.GoldenPath

All Implemented Interfaces:

AutoCloseable

Direct Known Subclasses:

GoldenPathQuery, GoldenPathSequenceAnalysis

public abstract class GoldenPath
extends Object
implements AutoCloseable

Perform useful queries against GoldenPath (UCSC) databases.

Author:

pavlidis

Field Summary

Fields

Modifier and Type	Field	Description
protected static org.apache.commons.logging.Log	log

Constructor Summary

Constructors

Constructor	Description
GoldenPath(Taxon taxon)	Create a GoldenPath database for a given taxon.

Method Summary

Modifier and Type	Method	Description
void	close()
protected DataSource	getDataSource()
protected org.springframework.jdbc.core.JdbcTemplate	getJdbcTemplate()
protected ExternalDatabase	getSearchedDatabase()
Taxon	getTaxon()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

log

protected static final org.apache.commons.logging.Log log

Constructor Detail

GoldenPath

public GoldenPath(Taxon taxon)

Create a GoldenPath database for a given taxon.

Method Detail

close

public void close()

Specified by:

close in interface AutoCloseable

getDataSource

protected DataSource getDataSource()

getJdbcTemplate

protected org.springframework.jdbc.core.JdbcTemplate getJdbcTemplate()

getSearchedDatabase

protected ExternalDatabase getSearchedDatabase()

getTaxon

public Taxon getTaxon()