@ParametersAreNonnullByDefault
Package ubic.gemma.persistence.service.expression.experiment
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Interface Summary Interface Description BioAssaySetService Generic service for dealing with all subclasses ofBioAssaySet.ExperimentalDesignDao ExperimentalDesignService ExperimentalFactorDao ExperimentalFactorService ExpressionExperimentDao Created by tesarst on 13/03/17.ExpressionExperimentPrePersistService Sets up the array designs before saving an experiment.ExpressionExperimentSearchService ExpressionExperimentService ExpressionExperimentSetService ExpressionExperimentSetValueObjectHelper ExpressionExperimentSubSetDao ExpressionExperimentSubSetService FactorValueDao FactorValueDeletion This interface needed to be extracted for factor value deletions in order to be able to make the methods transactionalFactorValueMigratorService FactorValueService GeeqDao GeeqService StatementDao -
Class Summary Class Description BioAssaySetServiceImpl ExperimentalDesignDaoImpl ExperimentalDesignServiceImpl Spring Service base class forubic.gemma.model.expression.experiment.ExperimentalDesignService, provides access to all services and entities referenced by this service.ExperimentalFactorDaoImpl ExperimentalFactorServiceImpl ExpressionExperimentDaoImpl ExpressionExperimentPrePersistServiceImpl Sets up the array designs, put the designelements in the data vectors.ExpressionExperimentSearchServiceImpl Handles searching for experiments and experiment setsExpressionExperimentService.CharacteristicWithUsageStatisticsAndOntologyTerm ExpressionExperimentServiceImpl ExpressionExperimentSetServiceImpl Spring Service base class forubic.gemma.model.analysis.expression.ExpressionExperimentSetService, provides access to all services and entities referenced by this service.ExpressionExperimentSetValueObjectHelperImpl This class will handle population of ExpressionExperimentSetValueObjects.ExpressionExperimentSubSetDaoImpl Base Spring DAO Class: is able to create, update, remove, load, and find objects of typeubic.gemma.model.expression.experiment.ExpressionExperimentSubSet.ExpressionExperimentSubSetServiceImpl FactorValueDaoImpl Base Spring DAO Class: is able to create, update, remove, load, and find objects of typeubic.gemma.model.expression.experiment.FactorValue.FactorValueDeletionImpl Handles deletions of a factor values.FactorValueMigratorService.Migration FactorValueMigratorService.MigrationResult FactorValueMigratorServiceImpl Deprecated. FactorValueServiceImpl Spring Service base class forFactorValueService, provides access to all services and entities referenced by this service.GeeqDaoImpl GeeqServiceImpl StatementDaoImpl -
Enum Summary Enum Description ExpressionExperimentMetaFileType Types of metadata files that can be attached to anExpressionExperiment.GeeqService.ScoreMode Modes for filling GEEQ scores. -
Exception Summary Exception Description FactorValueMigratorService.MigrationFailedException Keep track of the first failed migration when multiple migrations are performed in a single transaction.