Package ubic.gemma.persistence.service.expression.experiment

Interface ExperimentalDesignService

All Superinterfaces:

BaseImmutableService<ExperimentalDesign>, BaseReadOnlyService<ExperimentalDesign>, BaseService<ExperimentalDesign>

All Known Implementing Classes:

ExperimentalDesignServiceImpl

public interface ExperimentalDesignService
extends BaseService<ExperimentalDesign>

Author:

kelsey

Method Summary

Modifier and Type	Method	Description
ExperimentalDesign	find(ExperimentalDesign experimentalDesign)	Does a search for the entity in the persistent storage
ExpressionExperiment	getExpressionExperiment(ExperimentalDesign experimentalDesign)	Gets the expression experiment for the specified experimental design object
ExperimentalDesign	getRandomExperimentalDesignThatNeedsAttention(ExperimentalDesign excludeDesign)	Obtain a random experimental design that needs attention.
ExperimentalDesign	load(Long id)	Loads object with given ID.
Collection<ExperimentalDesign>	loadAll()	Loads all the entities of specific type.
ExperimentalDesign	loadWithExperimentalFactors(Long id)
void	update(Collection<ExperimentalDesign> entities)	Updates all entities in the given collection in the persistent storage.
void	update(ExperimentalDesign experimentalDesign)	Updates the given entity in the persistent storage.

Methods inherited from interface ubic.gemma.persistence.service.BaseImmutableService

create, create, findOrCreate, remove, remove, remove

Methods inherited from interface ubic.gemma.persistence.service.BaseReadOnlyService

countAll, findOrFail, getElementClass, load, loadOrFail, loadOrFail, loadOrFail, loadOrFail

Methods inherited from interface ubic.gemma.persistence.service.BaseService

save, save

Method Detail

find

@Secured({"IS_AUTHENTICATED_ANONYMOUSLY","AFTER_ACL_READ"})
ExperimentalDesign find(ExperimentalDesign experimentalDesign)

Description copied from interface: BaseReadOnlyService

Does a search for the entity in the persistent storage

Specified by:

find in interface BaseReadOnlyService<ExperimentalDesign>

Parameters:

experimentalDesign - the entity to be searched for

Returns:

the version of entity retrieved from the persistent storage, if found, otherwise null.

load

@Secured({"IS_AUTHENTICATED_ANONYMOUSLY","AFTER_ACL_READ"})
ExperimentalDesign load(Long id)

Description copied from interface: BaseReadOnlyService

Loads object with given ID.

Specified by:

load in interface BaseReadOnlyService<ExperimentalDesign>

Parameters:

id - the ID of entity to be loaded.

Returns:

the entity with matching ID, or null if the entity does not exist or if the passed ID was null

loadWithExperimentalFactors

@Secured({"IS_AUTHENTICATED_ANONYMOUSLY","AFTER_ACL_READ"})
ExperimentalDesign loadWithExperimentalFactors(Long id)

loadAll

@Secured("GROUP_ADMIN")
Collection<ExperimentalDesign> loadAll()

Description copied from interface: BaseReadOnlyService

Loads all the entities of specific type.

Specified by:

loadAll in interface BaseReadOnlyService<ExperimentalDesign>

Returns:

collection of all entities currently available in the persistent storage.

update

@Secured({"GROUP_USER","ACL_SECURABLE_EDIT"})
void update(Collection<ExperimentalDesign> entities)

Description copied from interface: BaseService

Updates all entities in the given collection in the persistent storage.

Specified by:

update in interface BaseService<ExperimentalDesign>

Parameters:

entities - the entities to be updated.

update

@Secured({"GROUP_USER","ACL_SECURABLE_EDIT"})
void update(ExperimentalDesign experimentalDesign)

Description copied from interface: BaseService

Updates the given entity in the persistent storage.

Specified by:

update in interface BaseService<ExperimentalDesign>

Parameters:

experimentalDesign - the entity to be updated.

getExpressionExperiment

@Secured({"IS_AUTHENTICATED_ANONYMOUSLY","AFTER_ACL_READ"})
ExpressionExperiment getExpressionExperiment(ExperimentalDesign experimentalDesign)

Gets the expression experiment for the specified experimental design object

Parameters:

experimentalDesign - experimental design

Returns:

experiment the given design belongs to

getRandomExperimentalDesignThatNeedsAttention

@Nullable
@Secured("GROUP_ADMIN")
ExperimentalDesign getRandomExperimentalDesignThatNeedsAttention(ExperimentalDesign excludeDesign)

Obtain a random experimental design that needs attention.

This operation is reserved to administrators.

See Also:

ExperimentalDesignDao.getRandomExperimentalDesignThatNeedsAttention(ExperimentalDesign)