Package ubic.gemma.model.common.description

Class BibliographicReferenceValueObject

java.lang.Object

ubic.gemma.model.common.IdentifiableValueObject<BibliographicReference>

ubic.gemma.model.common.description.BibliographicReferenceValueObject

All Implemented Interfaces:

Serializable, Identifiable

public class BibliographicReferenceValueObject
extends IdentifiableValueObject<BibliographicReference>

represents a BibliographicReferenceValueObject when this value object is needed in core, the same value object exists in web

Author:

pavlidis

See Also:

Serialized Form

Field Summary

Fields inherited from class ubic.gemma.model.common.IdentifiableValueObject

id

Constructor Summary

Constructors

Constructor	Description
BibliographicReferenceValueObject()	Required when using the class as a spring bean.
BibliographicReferenceValueObject(Long id)
BibliographicReferenceValueObject(Long id, String abstractText, String authorList, String issue, String pages, String pubAccession, String publication, Date publicationDate, String publisher, String title, String volume, Collection<ExpressionExperimentValueObject> experiments)
BibliographicReferenceValueObject(BibliographicReference ref)	does not set related experiments field

Method Summary

Modifier and Type	Method	Description
static CitationValueObject	constructCitation(BibliographicReference bib)
static Collection<CitationValueObject>	constructCitations(Collection<BibliographicReference> bibs)
static List<BibliographicReferenceValueObject>	convert2ValueObjects(Collection<BibliographicReference> refs)	does not set related experiments field
String	getAbstractText()
String	getAuthorList()
Collection<BibliographicPhenotypesValueObject>	getBibliographicPhenotypes()
Collection<String>	getChemicalsTerms()
CitationValueObject	getCitation()
Collection<ExpressionExperimentValueObject>	getExperiments()
String	getIssue()
Collection<String>	getMeshTerms()
String	getPages()
String	getPubAccession()
String	getPublication()
Date	getPublicationDate()
String	getPublisher()
String	getTitle()
String	getVolume()
boolean	isRetracted()
void	setAbstractText(String abstractText)
void	setAuthorList(String authorList)
void	setBibliographicPhenotypes(Collection<BibliographicPhenotypesValueObject> bibliographicPhenotypes)
void	setCitation(CitationValueObject citation)
void	setExperiments(Collection<ExpressionExperimentValueObject> experiments)
void	setIssue(String issue)
void	setPages(String pages)
void	setPubAccession(String pubAccession)
void	setPublication(String publication)
void	setPublicationDate(Date publicationDate)
void	setPublisher(String publisher)
void	setRetracted(boolean retracted)
void	setTitle(String title)
void	setVolume(String volume)

Methods inherited from class ubic.gemma.model.common.IdentifiableValueObject

getId, setId, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

BibliographicReferenceValueObject

public BibliographicReferenceValueObject()

Required when using the class as a spring bean.

BibliographicReferenceValueObject

public BibliographicReferenceValueObject(Long id)

BibliographicReferenceValueObject

public BibliographicReferenceValueObject(BibliographicReference ref)

does not set related experiments field

Parameters:

ref - bib ref

BibliographicReferenceValueObject

public BibliographicReferenceValueObject(Long id,
                                         String abstractText,
                                         String authorList,
                                         String issue,
                                         String pages,
                                         String pubAccession,
                                         String publication,
                                         Date publicationDate,
                                         String publisher,
                                         String title,
                                         String volume,
                                         Collection<ExpressionExperimentValueObject> experiments)

Method Detail

constructCitation

public static CitationValueObject constructCitation(BibliographicReference bib)

constructCitations

public static Collection<CitationValueObject> constructCitations(Collection<BibliographicReference> bibs)

convert2ValueObjects

public static List<BibliographicReferenceValueObject> convert2ValueObjects(Collection<BibliographicReference> refs)

does not set related experiments field

Parameters:

refs - bib refs

Returns:

bib ref VOs

getAbstractText

public String getAbstractText()

Returns:

the abstractText

setAbstractText

public void setAbstractText(String abstractText)

Parameters:

abstractText - the abstractText to set

getAuthorList

public String getAuthorList()

Returns:

the authorList

setAuthorList

public void setAuthorList(String authorList)

Parameters:

authorList - the authorList to set

getBibliographicPhenotypes

public Collection<BibliographicPhenotypesValueObject> getBibliographicPhenotypes()

setBibliographicPhenotypes

public void setBibliographicPhenotypes(Collection<BibliographicPhenotypesValueObject> bibliographicPhenotypes)

getChemicalsTerms

public Collection<String> getChemicalsTerms()

Returns:

the chemicalsTerms

getCitation

public CitationValueObject getCitation()

Returns:

the citation

setCitation

public void setCitation(CitationValueObject citation)

Parameters:

citation - the citation to set

getExperiments

public Collection<ExpressionExperimentValueObject> getExperiments()

Returns:

the experiments

setExperiments

public void setExperiments(Collection<ExpressionExperimentValueObject> experiments)

Parameters:

experiments - the experiments to set

getIssue

public String getIssue()

Returns:

the issue

setIssue

public void setIssue(String issue)

Parameters:

issue - the issue to set

getMeshTerms

public Collection<String> getMeshTerms()

Returns:

the meshTerms

getPages

public String getPages()

Returns:

the pages

setPages

public void setPages(String pages)

Parameters:

pages - the pages to set

getPubAccession

public String getPubAccession()

Returns:

the pubAccession

setPubAccession

public void setPubAccession(String pubAccession)

Parameters:

pubAccession - the pubAccession to set

getPublication

public String getPublication()

Returns:

the publication

setPublication

public void setPublication(String publication)

Parameters:

publication - the publication to set

getPublicationDate

public Date getPublicationDate()

Returns:

the publicationDate

setPublicationDate

public void setPublicationDate(Date publicationDate)

Parameters:

publicationDate - the publicationDate to set

getPublisher

public String getPublisher()

Returns:

the publisher

setPublisher

public void setPublisher(String publisher)

Parameters:

publisher - the publisher to set

getTitle

public String getTitle()

Returns:

the title

setTitle

public void setTitle(String title)

Parameters:

title - the title to set

getVolume

public String getVolume()

Returns:

the volume

setVolume

public void setVolume(String volume)

Parameters:

volume - the volume to set

isRetracted

public boolean isRetracted()

setRetracted

public void setRetracted(boolean retracted)