Package ubic.gemma.web.services

Class GoTerm2GeneEndpoint

java.lang.Object

org.springframework.xml.transform.TransformerObjectSupport

org.springframework.ws.server.endpoint.AbstractDomPayloadEndpoint

ubic.gemma.web.services.AbstractGemmaEndpoint

ubic.gemma.web.services.GoTerm2GeneEndpoint

All Implemented Interfaces:

org.springframework.ws.server.endpoint.PayloadEndpoint

public class GoTerm2GeneEndpoint
extends AbstractGemmaEndpoint

Given a Gene Ontology Term URI and a Taxon ID as input, will return a collection of gene IDs that match the GO Term and Taxon.

Author:

gavin, klc

Field Summary

Fields

Modifier and Type	Field	Description
static String	GO2Gene_LOCAL_NAME	The local name of the expected request/response.

Fields inherited from class ubic.gemma.web.services.AbstractGemmaEndpoint

DELIMITER, manualAuthenticationService, NAMESPACE_URI, REQUEST, RESPONSE

Fields inherited from class org.springframework.xml.transform.TransformerObjectSupport

logger

Constructor Summary

Constructors

Constructor	Description
GoTerm2GeneEndpoint()

Method Summary

Modifier and Type	Method	Description
protected Element	invokeInternal(Element requestElement, Document document)	Reads the given requestElement, and sends a the response back.
void	setGeneOntologyService(GeneOntologyService goS)	Sets the "business service" to delegate to.
void	settaxonService(TaxonService taxS)
void	setTaxonService(TaxonService taxonService)

Methods inherited from class ubic.gemma.web.services.AbstractGemmaEndpoint

authenticate, buildBadResponse, buildWrapper, encode, getArrayValues, getLastSingleNodeValue, getNodeValue, getOptionalNodeValue, getSingleNodeValue, readReport, readReport, readReport, setLocalName, setManualAuthenticationService, writeReport

Methods inherited from class org.springframework.ws.server.endpoint.AbstractDomPayloadEndpoint

createDocumentBuilder, createDocumentBuilderFactory, getDocumentElement, invoke, setAlwaysTransform, setExpandEntityReferences, setNamespaceAware, setValidating

Methods inherited from class org.springframework.xml.transform.TransformerObjectSupport

createTransformer, getTransformerFactory, newTransformerFactory, setTransformerFactoryClass, transform

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

GO2Gene_LOCAL_NAME

public static final String GO2Gene_LOCAL_NAME

The local name of the expected request/response.

See Also:

Constant Field Values

Constructor Detail

GoTerm2GeneEndpoint

public GoTerm2GeneEndpoint()

Method Detail

setGeneOntologyService

public void setGeneOntologyService(GeneOntologyService goS)

Sets the "business service" to delegate to.

settaxonService

public void settaxonService(TaxonService taxS)

setTaxonService

public void setTaxonService(TaxonService taxonService)

invokeInternal

protected Element invokeInternal(Element requestElement,
                                 Document document)

Reads the given requestElement, and sends a the response back.

Specified by:

invokeInternal in class org.springframework.ws.server.endpoint.AbstractDomPayloadEndpoint

Parameters:

requestElement - the contents of the SOAP message as DOM elements

document - a DOM document to be used for constructing Nodes

Returns:

the response element