NonPersistentNonOrderedCoexpLink (Gemma 1.31.3 API)

java.lang.Object
- ubic.gemma.persistence.service.association.coexpression.NonPersistentNonOrderedCoexpLink

All Implemented Interfaces:

Comparable<NonPersistentNonOrderedCoexpLink>
```
public class NonPersistentNonOrderedCoexpLink
extends Object
implements Comparable<NonPersistentNonOrderedCoexpLink>
```
Wrapper object used to track and eliminate duplicates. Crucial: for the purposes of "equals" and "hashcode", ignores the ID of the link, and the gene order. Sign is used. Sort order is by ID of the first gene only.

Author:

Paul

Constructor Summary

Constructors
Constructor	Description
`NonPersistentNonOrderedCoexpLink(Long g1, Long g2, boolean b)`
`NonPersistentNonOrderedCoexpLink(Gene2GeneCoexpression link)`
`NonPersistentNonOrderedCoexpLink(Gene g1, Gene g2, boolean b)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`int`	`compareTo(NonPersistentNonOrderedCoexpLink o)`
`boolean`	`equals(Object obj)`
`Long`	`getFirstGene()`
`Gene2GeneCoexpression`	`getLink()`
`Long`	`getSecondGene()`
`int`	`hashCode()`
`boolean`	`isPositiveCorrelation()`
`String`	`toString()`

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

NonPersistentNonOrderedCoexpLink

public NonPersistentNonOrderedCoexpLink(Gene g1,
                                        Gene g2,
                                        boolean b)

NonPersistentNonOrderedCoexpLink

public NonPersistentNonOrderedCoexpLink(Long g1,
                                        Long g2,
                                        boolean b)

NonPersistentNonOrderedCoexpLink

public NonPersistentNonOrderedCoexpLink(Gene2GeneCoexpression link)

Method Detail
- compareTo
```
public int compareTo(NonPersistentNonOrderedCoexpLink o)
```
  Specified by:
  
  compareTo in interface Comparable<NonPersistentNonOrderedCoexpLink>
- getFirstGene
```
public Long getFirstGene()
```
  Returns:
  
  The first gene for the underlying link; this is always the lower ID.
- getLink
```
public Gene2GeneCoexpression getLink()
```
  Returns:
  
  The underlying link (may be null depending on how this was constructed)
- getSecondGene
```
public Long getSecondGene()
```
  Returns:
  
  The second gene for the underlying link; this is always the higher ID - not necesssarily the secondGene
- hashCode
```
public int hashCode()
```
  Overrides:
  
  hashCode in class Object
- equals
```
public boolean equals(Object obj)
```
  Overrides:
  
  equals in class Object
- toString
```
public String toString()
```
  Overrides:
  
  toString in class Object
- isPositiveCorrelation
```
public boolean isPositiveCorrelation()
```