Package ubic.gemma.model.analysis.expression.coexpression

Class IdArray

java.lang.Object

ubic.gemma.model.analysis.expression.coexpression.IdArray

All Implemented Interfaces:

Serializable

Direct Known Subclasses:

GeneCoexpressedGenes, GeneCoexpressionTestedIn, IdArrayValueObject, SupportDetails

public abstract class IdArray
extends Object
implements Serializable

Represents a set of IDs for entities (e.g., genes or experiments), stored in a bitSet.

Author:

Paul

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field	Description
protected com.googlecode.javaewah.EWAHCompressedBitmap	data

Constructor Summary

Constructors

Constructor	Description
IdArray()

Method Summary

Modifier and Type	Method	Description
void	addEntities(Collection<Long> ids)
void	addEntity(Long ds)	Add the data set to the list of those which are in the array.
Collection<Long>	and(IdArray other)
Set<Long>	andSet(IdArray other)
byte[]	getBytes()
Collection<Long>	getIds()
Set<Long>	getIdsSet()
int	getNumIds()
boolean	isIncluded(Long g)	Use 'and' instead if possible.
void	removeEntity(Long ds)
void	setBytes(byte[] bytes)
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

data

protected com.googlecode.javaewah.EWAHCompressedBitmap data

Constructor Detail

IdArray

public IdArray()

Method Detail

addEntities

public void addEntities(Collection<Long> ids)

addEntity

public void addEntity(Long ds)

Add the data set to the list of those which are in the array. If it is already included, nothing will change.

Parameters:

ds - this is cast to an int

Throws:

IllegalArgumentException - if the value is too larger to be stored as an integer.

and

public Collection<Long> and(IdArray other)

Parameters:

other - the other idArray to compare with.

Returns:

datasets IDs it has in common with this.

andSet

public Set<Long> andSet(IdArray other)

Parameters:

other - the other idArray to compare with.

Returns:

datasets IDs it has in common with this, as a set

getBytes

public byte[] getBytes()

setBytes

public void setBytes(byte[] bytes)

getIds

public Collection<Long> getIds()

Returns:

datasets IDs

getIdsSet

public Set<Long> getIdsSet()

Returns:

set representation

getNumIds

public int getNumIds()

Returns:

how many datasets there are

isIncluded

public boolean isIncluded(Long g)

Use 'and' instead if possible.

Parameters:

g - the id to check for

Returns:

true if the given id is in this array

removeEntity

public void removeEntity(Long ds)

Parameters:

ds - ID of dataset to remove. If it isn't here, has no effect.

toString

public String toString()

Overrides:

toString in class Object