Package ubic.gemma.model.genome.sequenceAnalysis

Class BioSequenceValueObject

java.lang.Object

ubic.gemma.model.common.IdentifiableValueObject<BioSequence>

ubic.gemma.model.genome.sequenceAnalysis.BioSequenceValueObject

All Implemented Interfaces:

Serializable, Identifiable

public class BioSequenceValueObject
extends IdentifiableValueObject<BioSequence>

See Also:

Serialized Form

Field Summary

Fields inherited from class ubic.gemma.model.common.IdentifiableValueObject

id

Constructor Summary

Constructors

Constructor	Description
BioSequenceValueObject()	Required when using the class as a spring bean.

Method Summary

Modifier and Type	Method	Description
boolean	equals(Object obj)
static Collection<BioSequenceValueObject>	fromEntities(Collection<BioSequence> bsList)
static BioSequenceValueObject	fromEntity(BioSequence bs)
String	getDescription()
Double	getFractionRepeats()
Long	getLength()
String	getName()
String	getSequence()
DatabaseEntryValueObject	getSequenceDatabaseEntry()
TaxonValueObject	getTaxon()
SequenceTypeValueObject	getType()
int	hashCode()
void	setDescription(String description)
void	setFractionRepeats(Double fractionRepeats)
void	setLength(Long length)
void	setName(String name)
void	setSequence(String sequence)
void	setSequenceDatabaseEntry(DatabaseEntryValueObject sequenceDatabaseEntry)
void	setTaxon(TaxonValueObject taxon)
void	setType(SequenceTypeValueObject type)

Methods inherited from class ubic.gemma.model.common.IdentifiableValueObject

getId, setId, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

BioSequenceValueObject

public BioSequenceValueObject()

Required when using the class as a spring bean.

Method Detail

fromEntities

public static Collection<BioSequenceValueObject> fromEntities(Collection<BioSequence> bsList)

fromEntity

public static BioSequenceValueObject fromEntity(BioSequence bs)

equals

public boolean equals(Object obj)

Overrides:

equals in class Object

getDescription

public String getDescription()

setDescription

public void setDescription(String description)

getFractionRepeats

public Double getFractionRepeats()

setFractionRepeats

public void setFractionRepeats(Double fractionRepeats)

getLength

public Long getLength()

setLength

public void setLength(Long length)

getName

public String getName()

setName

public void setName(String name)

getSequence

public String getSequence()

setSequence

public void setSequence(String sequence)

getSequenceDatabaseEntry

public DatabaseEntryValueObject getSequenceDatabaseEntry()

setSequenceDatabaseEntry

public void setSequenceDatabaseEntry(DatabaseEntryValueObject sequenceDatabaseEntry)

getTaxon

public TaxonValueObject getTaxon()

setTaxon

public void setTaxon(TaxonValueObject taxon)

getType

public SequenceTypeValueObject getType()

setType

public void setType(SequenceTypeValueObject type)

hashCode

public int hashCode()

Overrides:

hashCode in class Object