Parser (Gemma 1.31.10 API)

All Known Subinterfaces:

LineParser<T>

All Known Implementing Classes:

AffyProbeReader, ArrayDesignParser, BasicLineMapParser, BasicLineParser, BiomartEnsembleNcbiParser, BlatResultParser, CompositeSequenceParser, FastaParser, GeoFamilyParser, IlluminaProbeReader, LineMapParser, NcbiGene2AccessionParser, NCBIGene2GOAssociationParser, NcbiGeneEnsemblFileParser, NcbiGeneHistoryParser, NcbiGeneInfoParser, ProbeSequenceParser, RecordParser, SwissProtParser, TaxonParser
```
public interface Parser<T>
```
Interface for classes that allow parsing of files and streams.

Author:

pavlidis

Field Summary

Fields
Modifier and Type Field Description

static int PARSE_ALERT_FREQUENCY

Method Summary

All Methods Instance Methods Abstract Methods
Modifier and Type	Method	Description
`Collection<T>`	`getResults()`
`void`	`parse(File f)`	Parse a `File`
`void`	`parse(InputStream is)`	Parse a `InputStream`.
`void`	`parse(String filename)`	Parse a file identified by its path.

- Field Detail
  - PARSE_ALERT_FREQUENCY
```
static final int PARSE_ALERT_FREQUENCY
```
    See Also:
    
    Constant Field Values
- Method Detail
  - getResults
```
Collection<T> getResults()
```
    Returns:
    
    the results of the parse.
  - parse
```
void parse(File f)
    throws IOException
```
    Parse a File
    
    Parameters:
    
    f - file
    
    Throws:
    
    IOException - if there is a problem while manipulating the file
  - parse
```
void parse(InputStream is)
    throws IOException
```
    Parse a InputStream.
    
    Parameters:
    
    is - input stream
    
    Throws:
    
    IOException - if there is a problem while manipulating the file
  - parse
```
void parse(String filename)
    throws IOException
```
    Parse a file identified by its path.
    
    Parameters:
    
    filename - Absolute path to the file
    
    Throws:
    
    IOException - if there is a problem while manipulating the file